CuGenDBv2

Gene ID	MS026238
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	scaffold797:1046267..1046748
RNA-Seq Expression	MS026238
Synteny	MS026238
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031285.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.8e-16

71.83

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA SGLL YSS Y+
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

XP_016901757.1 PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like [Cucumis melo]

1.8e-16

71.83

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA SGLL YSS Y+
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

XP_022135848.1 pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia]

1.4e-18

80.6

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYS
        MA  KSLF EGKDVELNQLLESTLKS RI++AELAK LVKI HKEGN+DAVFNVLK+MA++GLL YS
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYS

XP_022972338.1 pentatricopeptide repeat-containing protein At5g39710 [Cucurbita maxima]

3.0e-16

69.01

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA    LFAEGKDVELN++LE TLKS +I++AELAKVLV I +KEGN+DAVFNV+K+MA+SGLL YSS ++
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

XP_038888734.1 pentatricopeptide repeat-containing protein At5g39710 [Benincasa hispida]

1.9e-18

79.41

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSS
        MA  KSLF+EGKDVELNQLLE TLKS RI++AELAKVLV+I +KEGN+DAVFNVLK+MA+SGLL YSS
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E0J0 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like

8.5e-17

71.83

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA SGLL YSS Y+
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

A0A5D3C4F1 Pentatricopeptide repeat-containing protein

8.5e-17

71.83

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA SGLL YSS Y+
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

A0A6J1C1W8 pentatricopeptide repeat-containing protein At5g39710

6.9e-19

80.6

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYS
        MA  KSLF EGKDVELNQLLESTLKS RI++AELAK LVKI HKEGN+DAVFNVLK+MA++GLL YS
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYS

A0A6J1GKD6 pentatricopeptide repeat-containing protein At5g39710

1.4e-16

70.42

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA    LFAEGKDVELN++LE TLKS RI++AELAKVLV I +KEGN+DAVFNV+K+MA+SGLL YSS ++
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

A0A6J1I9N0 pentatricopeptide repeat-containing protein At5g39710

1.4e-16

69.01

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM
        MA    LFAEGKDVELN++LE TLKS +I++AELAKVLV I +KEGN+DAVFNV+K+MA+SGLL YSS ++
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYM

SwissProt top hits

e value

%identity

Alignment

Q9FIX3 Pentatricopeptide repeat-containing protein At5g39710

2.2e-09

53.12

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLL
        +A VK+L  EGK  ELN ++   L+S  +S AE AKVLV+I H+EGN+D V +VL EMA  G L
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLL

Arabidopsis top hits

e value

%identity

Alignment

AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.5e-10

53.12

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Query:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLL
        +A VK+L  EGK  ELN ++   L+S  +S AE AKVLV+I H+EGN+D V +VL EMA  G L
Subjt:  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLL

Sequences

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CDS sequence

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ATGGAAATCAGCCCATCATCATCTAAGAGCTCGCTTCTGAACTTAGGCTTGGCCCCGATCCATCCCGCTCAACATTTGTTCTTGATTTGTTCCCCACTTCGTGACTACAT
GGCTCCAGTCAAATCACTATTTGCTGAAGGAAAAGATGTAGAATTGAATCAACTTCTTGAGAGCACACTGAAAAGCTATAGGATAAGCAACGCAGAACTAGCGAAGGTAC
TCGTCAAAATCAAGCATAAAGAAGGTAACTTGGATGCAGTTTTCAATGTGCTTAAAGAGATGGCTTACAGTGGCTTACTATCATACAGTTCTGGTTACATGGGCGTGTGA

mRNA sequence

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Protein sequence

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MEISPSSSKSSLLNLGLAPIHPAQHLFLICSPLRDYMAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYMGV

MS026238 (gene) of Bitter gourd (TR) v1 genome