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MS026381 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026381
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS
Genome locationscaffold459:1519406..1521946
RNA-Seq ExpressionMS026381
SyntenyMS026381
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0040008 - regulation of growth (biological process)
InterPro domainsIPR044683 - LAZY family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581771.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1136.13Show/hide
Query:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS
        K+  R+  +    + +   E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E      GD++ H   SIVK+S
Subjt:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS

Query:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIYIXYNMV
        + FLVKK+FVC  G SGF    P    + TPQDA M KV       Y  +  N V
Subjt:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIYIXYNMV

KAG7018221.1 hypothetical protein SDJN02_20089, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-1236.91Show/hide
Query:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS
        K+  R+  +    + +   E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E      GD++ H   SIVK+S
Subjt:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS

Query:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY
        + FLVKK+FVC  G SGF    P    + TPQDA M K+  +  H  IY
Subjt:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY

XP_022955951.1 uncharacterized protein LOC111457786 [Cucurbita moschata]6.1e-1336.91Show/hide
Query:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS
        K+  R+  +    + +   E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E      GD++ H   SIV++S
Subjt:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS

Query:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY
        + FL+KK+FVC  G SGFA   P P  + TPQDA M K+  +  H  IY
Subjt:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY

XP_022980726.1 uncharacterized protein LOC111480009 [Cucurbita maxima]2.0e-1140Show/hide
Query:  EEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE-------GDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFA
        E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E        D K++  SIV++S+ FLVKK+FVC  G SGFA
Subjt:  EEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE-------GDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFA

Query:  VTLPLPRLLPTPQDARMNKVHAIHTHTYIY
             P  + TPQDA M K+  +  H  IY
Subjt:  VTLPLPRLLPTPQDARMNKVHAIHTHTYIY

XP_023527029.1 uncharacterized protein LOC111790378 [Cucurbita pepo subsp. pepo]9.4e-1438.26Show/hide
Query:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS
        K+  R+  +    + +   EE  E+ PSLP+GLL+IGTFGNN  ++N  + + +           +D  + E + E  E      GD++ H   SIVK+S
Subjt:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS

Query:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY
        + FLVKK+FVCG G  GFA   P P  + TPQDA M K+  +  H  IY
Subjt:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY

TrEMBL top hitse value%identityAlignment
A0A0A0L9D5 Uncharacterized protein3.5e-0632.93Show/hide
Query:  VDEEEGESIPSLPIGLLAIGTFGNN----------------NGKSNSNNEDRIDD---ETVLEFEAE---------------------------------
        +++   ES  SLP+GLLAIGTFGNN                + KS  N  D  +D   E V E E E                                 
Subjt:  VDEEEGESIPSLPIGLLAIGTFGNN----------------NGKSNSNNEDRIDD---ETVLEFEAE---------------------------------

Query:  -----NGEGD---NKSHRNSIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV
               EGD   N   R SIVK+S+ FL+KK+F+CGSG +    + P P  +  PQDA M KV
Subjt:  -----NGEGD---NKSHRNSIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV

A0A5A7UIH7 Uncharacterized protein7.8e-0629.38Show/hide
Query:  MELGTWCSLHNICKMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNN----------------NGKSNSNNEDRIDDET---VLEFEAE---
        M+L +W       K+K +        +   +++   ES  SLP+GLLAIGTFGNN                + KS SN  D  +D +   V E E E   
Subjt:  MELGTWCSLHNICKMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNN----------------NGKSNSNNEDRIDDET---VLEFEAE---

Query:  -----------------------------------NGEGDNKSHRN---SIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV
                                             +GD + + +   SIVK+S+ FLVKK+F+CGSG +    + P P  +  PQDA M KV
Subjt:  -----------------------------------NGEGDNKSHRN---SIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV

A0A6J1GV88 uncharacterized protein LOC1114577863.0e-1336.91Show/hide
Query:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS
        K+  R+  +    + +   E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E      GD++ H   SIV++S
Subjt:  KMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE------GDNKSHR-NSIVKKS

Query:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY
        + FL+KK+FVC  G SGFA   P P  + TPQDA M K+  +  H  IY
Subjt:  IPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIY

A0A6J1IUE0 uncharacterized protein LOC1114800099.5e-1240Show/hide
Query:  EEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE-------GDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFA
        E+  E+ PSLP+GLLAIGTFGNN  ++N  + + +           +D  + E + E  E        D K++  SIV++S+ FLVKK+FVC  G SGFA
Subjt:  EEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRI-----------DDETVLEFEAENGE-------GDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFA

Query:  VTLPLPRLLPTPQDARMNKVHAIHTHTYIY
             P  + TPQDA M K+  +  H  IY
Subjt:  VTLPLPRLLPTPQDARMNKVHAIHTHTYIY

A0A7J6G908 Uncharacterized protein2.7e-0632.84Show/hide
Query:  MELGTWCSLHNICKMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRIDDETVLEFEAENGEGDNKSHRNSIVKKSIPFLV
        M L  W  + N    K+      TV + ++  +E  E     P GLL+IGTF N+  K    +ED     +V+  +        K+ +++I KKSI FL+
Subjt:  MELGTWCSLHNICKMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRIDDETVLEFEAENGEGDNKSHRNSIVKKSIPFLV

Query:  KKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV
        KK+FVCGSG        P P L  + Q+++M K+
Subjt:  KKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17400.1 unknown protein3.2e-0438.1Show/hide
Query:  EGDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYI
        E  N   +  I K S+ +L KK+FVC  G S    T P P L  T Q++RM K+  +  H  I
Subjt:  EGDNKSHRNSIVKKSIPFLVKKLFVCGSGSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGGAGCTCGGAACTTGGTGCAGCTTGCACAATATCTGCAAGATGAAGGAGAGATTAAATCTGGAGACTACAGTTCAATCAGATGATTTTGTTGATGAAGAAGA
AGGTGAAAGCATTCCCTCTTTGCCGATTGGGCTGCTGGCAATTGGAACTTTTGGCAACAACAATGGCAAAAGTAACAGTAATAATGAGGATCGAATTGATGATGAAACAG
TACTAGAATTTGAAGCAGAGAATGGTGAGGGTGACAACAAAAGTCATCGCAACTCTATTGTGAAGAAATCTATTCCATTTCTCGTCAAGAAGTTGTTTGTGTGTGGGAGT
GGAAGCAGTGGTTTTGCAGTTACACTGCCCCTGCCCCGGCTCCTGCCCACGCCCCAAGACGCCAGGATGAACAAGGTACATGCAATACACACACACACATATATATATAT
ATAATATAATATGGTAAAATACGTTTTAGTCCCTGAGTTTGATACGCTCGATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGGAGCTCGGAACTTGGTGCAGCTTGCACAATATCTGCAAGATGAAGGAGAGATTAAATCTGGAGACTACAGTTCAATCAGATGATTTTGTTGATGAAGAAGA
AGGTGAAAGCATTCCCTCTTTGCCGATTGGGCTGCTGGCAATTGGAACTTTTGGCAACAACAATGGCAAAAGTAACAGTAATAATGAGGATCGAATTGATGATGAAACAG
TACTAGAATTTGAAGCAGAGAATGGTGAGGGTGACAACAAAAGTCATCGCAACTCTATTGTGAAGAAATCTATTCCATTTCTCGTCAAGAAGTTGTTTGTGTGTGGGAGT
GGAAGCAGTGGTTTTGCAGTTACACTGCCCCTGCCCCGGCTCCTGCCCACGCCCCAAGACGCCAGGATGAACAAGGTACATGCAATACACACACACACATATATATATAT
ATAATATAATATGGTAAAATACGTTTTAGTCCCTGAGTTTGATACGCTCGATCCCTAA
Protein sequenceShow/hide protein sequence
MSMELGTWCSLHNICKMKERLNLETTVQSDDFVDEEEGESIPSLPIGLLAIGTFGNNNGKSNSNNEDRIDDETVLEFEAENGEGDNKSHRNSIVKKSIPFLVKKLFVCGS
GSSGFAVTLPLPRLLPTPQDARMNKVHAIHTHTYIYIUYNMVKYVLVPEFDTLDP