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MS026421 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026421
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFAD-binding Berberine family protein
Genome locationscaffold402:1196732..1197768
RNA-Seq ExpressionMS026421
SyntenyMS026421
Gene Ontology termsGO:0005576 - extracellular region (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsIPR016169 - FAD-binding, type PCMH, subdomain 2
IPR036318 - FAD-binding, type PCMH-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PQM37216.1 berberine bridge enzyme-like 22 [Prunus yedoensis var. nudiflora]4.0e-1344.66Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE
        L NL S+ ++V + TAW++S ATLGEL Y IAKKS +L FP                           AAD+V+DA ++D NG++LDR++M RICFGPLE
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE

Query:  AKE
          E
Subjt:  AKE

XP_008445684.1 PREDICTED: tetrahydrocannabinolic acid synthase-like [Cucumis melo]2.3e-1348.96Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL S+ + VENNTAW+ES ATLGEL Y I +KSRTL FP                           AAD+V+DAY+VDANGK+LD++SMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

XP_017636059.1 PREDICTED: cannabidiolic acid synthase-like 1 [Gossypium arboreum]7.2e-1564.62Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPAADHVVDAYMVDANGKLLDRKSMG
        L NL S+ + VE  TAW+ES AT+GEL Y IA+KSRTL FPAAD+V+DA ++DA G++LDRKSMG
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPAADHVVDAYMVDANGKLLDRKSMG

XP_022927076.1 berberine bridge enzyme-like 18 [Cucurbita moschata]3.0e-1347.92Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI +++ENNTAW++S AT+GE+ Y IAKKSRTL FP                           AAD+VVDAY+VDA GK+LDR++MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

XP_038894066.1 berberine bridge enzyme-like 18 [Benincasa hispida]3.6e-1450.5Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE
        L +  SI I  +NNTAW+ES ATLGEL Y IAKKS+TL FP                           AADHVVDA +VDANGKLLDRKSMG   F  + 
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A1S3BDA8 tetrahydrocannabinolic acid synthase-like1.1e-1348.96Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL S+ + VENNTAW+ES ATLGEL Y I +KSRTL FP                           AAD+V+DAY+VDANGK+LD++SMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

A0A314UK63 Berberine bridge enzyme-like 221.9e-1344.66Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE
        L NL S+ ++V + TAW++S ATLGEL Y IAKKS +L FP                           AAD+V+DA ++D NG++LDR++M RICFGPLE
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPLE

Query:  AKE
          E
Subjt:  AKE

A0A5A7TU57 Tetrahydrocannabinolic acid synthase-like1.1e-1348.96Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL S+ + VENNTAW+ES ATLGEL Y I +KSRTL FP                           AAD+V+DAY+VDANGK+LD++SMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

A0A6J1EGP1 berberine bridge enzyme-like 181.5e-1347.92Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI +++ENNTAW++S AT+GE+ Y IAKKSRTL FP                           AAD+VVDAY+VDA GK+LDR++MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

A0A6P4NDP1 cannabidiolic acid synthase-like 13.5e-1564.62Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPAADHVVDAYMVDANGKLLDRKSMG
        L NL S+ + VE  TAW+ES AT+GEL Y IA+KSRTL FPAAD+V+DA ++DA G++LDRKSMG
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPAADHVVDAYMVDANGKLLDRKSMG

SwissProt top hitse value%identityAlignment
A6P6W0 Cannabidiolic acid synthase-like 15.0e-1137.5Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L N+ S+ I V + TAW+E+ ATLGE+ YWI + +  L FP                           AAD+++DA++V+ +GK+LDRKSMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

A6P6W1 Cannabidiolic acid synthase-like 22.3e-1138.54Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L N+ S+ I V + TAW+ES ATLGE+ YWI + +  L FP                           AAD+++DA++V+ +GK+LDRKSMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

Q8GTB6 Tetrahydrocannabinolic acid synthase1.0e-1139.58Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L N+ SI I V + TAW+E+ ATLGE+ YWI +K+  L FP                           AAD+++DA++V+ +GK+LDRKSMG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

Q9FI25 Berberine bridge enzyme-like 271.3e-1140.62Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI + V+N T W++S AT+GEL Y I K S++L FPA                           AD+V+DA++VDANG  LDR+ MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF

Q9SVG5 Berberine bridge enzyme-like 186.0e-1239.58Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI + V+N + W+++ AT+GEL Y I KK+RTL FP                           AADHV+DA +VDA G++L+R+ MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

Arabidopsis top hitse value%identityAlignment
AT4G20820.1 FAD-binding Berberine family protein4.2e-1339.58Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI + V+N + W+++ AT+GEL Y I KK+RTL FP                           AADHV+DA +VDA G++L+R+ MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF

AT4G20860.1 FAD-binding Berberine family protein8.8e-1140.4Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPL
        L NL SI I++ + TAWI+S ATLGE+ Y IAK S+   F                            A+D+VVDA ++D NGK LDRK+MG   F  L
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICFGPL

AT5G44400.1 FAD-binding Berberine family protein3.0e-1138.54Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF
        L  +  + I++++N+AW++S AT+GEL Y IA+KS+   FPA                           AD+V+DA +VDANGKLLDR +MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF

AT5G44410.1 FAD-binding Berberine family protein9.4e-1340.62Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI + V+N T W++S AT+GEL Y I K S++L FPA                           AD+V+DA++VDANG  LDR+ MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPA---------------------------ADHVVDAYMVDANGKLLDRKSMGRICF

AT5G44440.1 FAD-binding Berberine family protein4.0e-1136.46Show/hide
Query:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF
        L NL SI + V+N T W+++ AT GEL Y I K +++L FP                           AAD+++DA +VDA+G++LDR++MG   F
Subjt:  LPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFP---------------------------AADHVVDAYMVDANGKLLDRKSMGRICF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTCGTTCTCCGAAGGGCGACGACTCCATTTCGAAAGTCATTTACACTTGAGAAAACTCTTCCTAATCTTACCTCAATTGTCATCCACGTTGAGAACAACACTGC
ATGGATTGAGTCTAGTGCAACTCTCGGCGAACTTCGTTATTGGATCGCTAAGAAGAGCAGGACGCTTGTCTTTCCAGCTGCTGATCATGTGGTGGATGCTTACATGGTTG
ATGCAAACGGAAAGCTTTTGGATAGAAAATCAATGGGAAGGATTTGTTTTGGGCCATTAGAGGCGAAGGAGGAAGCTTTGGAATTGTTCTCGCATGGAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTCGTTCTCCGAAGGGCGACGACTCCATTTCGAAAGTCATTTACACTTGAGAAAACTCTTCCTAATCTTACCTCAATTGTCATCCACGTTGAGAACAACACTGC
ATGGATTGAGTCTAGTGCAACTCTCGGCGAACTTCGTTATTGGATCGCTAAGAAGAGCAGGACGCTTGTCTTTCCAGCTGCTGATCATGTGGTGGATGCTTACATGGTTG
ATGCAAACGGAAAGCTTTTGGATAGAAAATCAATGGGAAGGATTTGTTTTGGGCCATTAGAGGCGAAGGAGGAAGCTTTGGAATTGTTCTCGCATGGAAGATAA
Protein sequenceShow/hide protein sequence
MSFVLRRATTPFRKSFTLEKTLPNLTSIVIHVENNTAWIESSATLGELRYWIAKKSRTLVFPAADHVVDAYMVDANGKLLDRKSMGRICFGPLEAKEEALELFSHGR