; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS026443 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026443
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionethylene-responsive transcription factor 12
Genome locationscaffold402:2677937..2678425
RNA-Seq ExpressionMS026443
SyntenyMS026443
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652722.1 hypothetical protein Csa_014191 [Cucumis sativus]1.6e-5069.23Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP         
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------

Query:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPP
        S+S S SSTR LLGDFL    RND+ C +NV  SP         +S A+ SF+GHVRRGL  DLNEPPP
Subjt:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPP

XP_004146616.1 ethylene-responsive transcription factor 12 [Cucumis sativus]7.8e-5369.77Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP         
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------

Query:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        S+S S SSTR LLGDFL    RND+ C +NV  SP         +S A+ SF+GHVRRGL  DLNEPPPVWL
Subjt:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

XP_008442801.1 PREDICTED: ethylene-responsive transcription factor 12 [Cucumis melo]2.9e-5269.71Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP       S+
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST

Query:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL
        S+SSSS R LLGDFL    RND+ C +NV     AA P++++ SA     A+ SF+GHVRRGL  DLNEPPPVWL
Subjt:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL

XP_023001756.1 ethylene-responsive transcription factor 12 [Cucurbita maxima]1.2e-5071.26Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPT----PSTSTS
        +S RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPL      LDLNVSS+      WP+    PS+S+S
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPT----PSTSTS

Query:  SSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        SSS RLLLGDFL    RNDL C VNV  SP         A   T SF+GHVRRGL  DLNEPPPVWL
Subjt:  SSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

XP_038895107.1 ethylene-responsive transcription factor 12 [Benincasa hispida]1.5e-5169.09Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTS--SS
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP+P  +  LDLNVSS       WPT +++ +  SS
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTS--SS

Query:  STRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        S R LLGDFL    RND+ C +N   SP          + ATTSF+GHVRRGL  DLNEPPPVWL
Subjt:  STRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

TrEMBL top hitse value%identityAlignment
A0A0A0LSE4 AP2/ERF domain-containing protein3.8e-5369.77Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP         
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP---------

Query:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        S+S S SSTR LLGDFL    RND+ C +NV  SP         +S A+ SF+GHVRRGL  DLNEPPPVWL
Subjt:  STSTSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

A0A1S3B631 ethylene-responsive transcription factor 121.4e-5269.71Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP       S+
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST

Query:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL
        S+SSSS R LLGDFL    RND+ C +NV     AA P++++ SA     A+ SF+GHVRRGL  DLNEPPPVWL
Subjt:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL

A0A5D3DSV2 Ethylene-responsive transcription factor 121.4e-5269.71Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST
        +S REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLP  +  LDLNVS    GP  WPTP       S+
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTP-------ST

Query:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL
        S+SSSS R LLGDFL    RND+ C +NV     AA P++++ SA     A+ SF+GHVRRGL  DLNEPPPVWL
Subjt:  STSSSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASA-----ATTSFLGHVRRGLLIDLNEPPPVWL

A0A6J1K1B3 ethylene-responsive transcription factor 12-like3.9e-5068.1Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSST
        +S R+GHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFP PL +A    DLNVS   A P+     STS+SSSS 
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSST

Query:  RLLLGDFLRNDL----CCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        RLLLGDFLR+       C V+V  SP           ++T SF+GHVRR L  DLNEPPPVWL
Subjt:  RLLLGDFLRNDL----CCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

A0A6J1KJH9 ethylene-responsive transcription factor 126.0e-5171.26Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPT----PSTSTS
        +S RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPL      LDLNVSS+      WP+    PS+S+S
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPT----PSTSTS

Query:  SSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL
        SSS RLLLGDFL    RNDL C VNV  SP         A   T SF+GHVRRGL  DLNEPPPVWL
Subjt:  SSSTRLLLGDFL----RNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL

SwissProt top hitse value%identityAlignment
O80339 Ethylene-responsive transcription factor 35.1e-2370.67Show/hide
Query:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFP-----PPLPS
        + S +E  +RGVRKRPWGR+AAEIRDPWKK RVWLGTFD+ EEAA AYD AAR+LRG KAKTNFP     PP P+
Subjt:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFP-----PPLPS

Q40477 Ethylene-responsive transcription factor 45.1e-2359Show/hide
Query:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSSTRLL
        +E HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNFP P  + +      V SS+        P        TR L
Subjt:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSSTRLL

Q94ID6 Ethylene-responsive transcription factor 124.4e-3550.25Show/hide
Query:  MASSS-GREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPAT---------
        MAS++  RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG KAKTNFP PL      LDLN   SA   AT         
Subjt:  MASSS-GREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPAT---------

Query:  ----W-----PTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH----------------VRRGLLIDLNEPPPVWL
            W     P P +S        +   FLR  +        S   AP     +    TS  G+                VRRGL IDLNEPPP+WL
Subjt:  ----W-----PTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH----------------VRRGLLIDLNEPPPVWL

Q9FE67 Ethylene-responsive transcription factor 97.9e-2484.13Show/hide
Query:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP
        +E H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGSKAKTNFP P
Subjt:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP

Q9SXS8 Ethylene-responsive transcription factor 33.0e-2336.71Show/hide
Query:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP-----------------------LPSAAAVLDL
        S   +E  +RGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+ E+AA AYD AAR+LRG KAKTNFP P                        P    ++  
Subjt:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP-----------------------LPSAAAVLDL

Query:  NVSSSA--------AGPATWPTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH------------------VRRGLLID
          +SS+        +GP   P P   T++SS +                   SPP  P        +++S + H                   R+ LL D
Subjt:  NVSSSA--------AGPATWPTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH------------------VRRGLLID

Query:  LNEPPPV
        LN PPP+
Subjt:  LNEPPPV

Arabidopsis top hitse value%identityAlignment
AT1G28360.1 ERF domain protein 123.2e-3650.25Show/hide
Query:  MASSS-GREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPAT---------
        MAS++  RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG KAKTNFP PL      LDLN   SA   AT         
Subjt:  MASSS-GREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPAT---------

Query:  ----W-----PTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH----------------VRRGLLIDLNEPPPVWL
            W     P P +S        +   FLR  +        S   AP     +    TS  G+                VRRGL IDLNEPPP+WL
Subjt:  ----W-----PTPSTSTSSSSTRLLLGDFLRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGH----------------VRRGLLIDLNEPPPVWL

AT1G28370.1 ERF domain protein 113.4e-2255.34Show/hide
Query:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAV-LDLNVSSSAAGPATWPTPSTSTSSS
        ++ G    YRGVRKRPWGRYAAEIRDP+KK+RVWLGTFDTPEEAA AYD  A   RG+KAKTNFP    +A  + L  ++S S+   +++P  +  + S 
Subjt:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAV-LDLNVSSSAAGPATWPTPSTSTSSS

Query:  STR
        S+R
Subjt:  STR

AT1G50640.1 ethylene responsive element binding factor 33.6e-2470.67Show/hide
Query:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFP-----PPLPS
        + S +E  +RGVRKRPWGR+AAEIRDPWKK RVWLGTFD+ EEAA AYD AAR+LRG KAKTNFP     PP P+
Subjt:  SSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFP-----PPLPS

AT3G15210.1 ethylene responsive element binding factor 42.3e-2356.73Show/hide
Query:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSST
        ++ +E  YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RG+KAKTNFP         L+L+      G A  P+ S++   +S 
Subjt:  SSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSST

Query:  RLLL
          L+
Subjt:  RLLL

AT5G44210.1 erf domain protein 95.6e-2584.13Show/hide
Query:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP
        +E H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGSKAKTNFP P
Subjt:  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCGAGTGGTCGTGAGGGGCACTACAGAGGCGTGAGGAAGAGGCCGTGGGGGCGCTACGCCGCTGAGATACGCGACCCGTGGAAGAAGACCAGAGTTTGGTT
GGGTACTTTCGACACCCCAGAAGAGGCCGCCCTTGCTTACGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCTAAGACCAACTTCCCTCCGCCACTCCCTTCCGCTG
CCGCCGTCCTCGACCTCAACGTCTCCTCCTCCGCCGCCGGACCCGCCACCTGGCCCACCCCTTCCACTTCCACTTCCTCTTCCTCCACTCGGCTCCTGCTCGGCGATTTC
CTCCGCAACGACCTGTGCTGCCCCGTCAATGTGGGCCCCTCTCCCCCGGCTGCTCCTCCCATGGTGCTCGAAGCCTCCGCCGCTACGACGTCGTTTCTTGGGCACGTGCG
GCGCGGCCTCCTCATTGATCTCAACGAGCCTCCCCCGGTGTGGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGTCGAGTGGTCGTGAGGGGCACTACAGAGGCGTGAGGAAGAGGCCGTGGGGGCGCTACGCCGCTGAGATACGCGACCCGTGGAAGAAGACCAGAGTTTGGTT
GGGTACTTTCGACACCCCAGAAGAGGCCGCCCTTGCTTACGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCTAAGACCAACTTCCCTCCGCCACTCCCTTCCGCTG
CCGCCGTCCTCGACCTCAACGTCTCCTCCTCCGCCGCCGGACCCGCCACCTGGCCCACCCCTTCCACTTCCACTTCCTCTTCCTCCACTCGGCTCCTGCTCGGCGATTTC
CTCCGCAACGACCTGTGCTGCCCCGTCAATGTGGGCCCCTCTCCCCCGGCTGCTCCTCCCATGGTGCTCGAAGCCTCCGCCGCTACGACGTCGTTTCTTGGGCACGTGCG
GCGCGGCCTCCTCATTGATCTCAACGAGCCTCCCCCGGTGTGGCTGTGA
Protein sequenceShow/hide protein sequence
MASSSGREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLPSAAAVLDLNVSSSAAGPATWPTPSTSTSSSSTRLLLGDF
LRNDLCCPVNVGPSPPAAPPMVLEASAATTSFLGHVRRGLLIDLNEPPPVWL