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MS026509 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026509
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:182476..182733
RNA-Seq ExpressionMS026509
SyntenyMS026509
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273215.1 unnamed protein product [Prunus armeniaca]5.4e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R+ S V  N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

CAB4303742.1 unnamed protein product [Prunus armeniaca]5.4e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R+ S V  N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

KAF5202463.1 hypothetical protein FRX31_007953 [Thalictrum thalictroides]5.4e-0543.33Show/hide
Query:  MRQLW------KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK
        MR+LW      + REK  +    ESD       +LVR+ S    N   V +DG  +++  K+KSQ QCWKHQC  KKL+RN S +S+NSK
Subjt:  MRQLW------KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK

KAG6604769.1 hypothetical protein SDJN03_02086, partial [Cucurbita argyrosperma subsp. sororia]8.8e-2475Show/hide
Query:  MRQLWKSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK
        MR+LWKSREK+   D+ ES+GH    AELVRSVS I+RNE EV KDGG EMVGLKKK QCQCWKHQCGMKKLDRNLS +SK SK
Subjt:  MRQLWKSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK

ONI16745.1 hypothetical protein PRUPE_3G119000 [Prunus persica]7.0e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R  S V+ N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

TrEMBL top hitse value%identityAlignment
A0A251Q241 Retrotrans_gag domain-containing protein3.4e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R  S V+ N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

A0A314XUV4 Retrotrans_gag domain-containing protein4.5e-0554.55Show/hide
Query:  LVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        LVR VS + + E E VE++   E++GLKKK QCQ WKHQC  KKL+R+ S V+ N
Subjt:  LVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

A0A6J5UDI4 Retrotrans_gag domain-containing protein2.6e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R+ S V  N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

A0A6J5WVM6 Retrotrans_gag domain-containing protein2.6e-0545.24Show/hide
Query:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN
        MR+LW KS+E+                  LVR VS + + E E VE++   E+V LKKK QCQCWKHQC  KKL+R+ S V  N
Subjt:  MRQLW-KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVE-VEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKN

A0A7J6WZH2 Retrotrans_gag domain-containing protein2.6e-0543.33Show/hide
Query:  MRQLW------KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK
        MR+LW      + REK  +    ESD       +LVR+ S    N   V +DG  +++  K+KSQ QCWKHQC  KKL+RN S +S+NSK
Subjt:  MRQLW------KSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGTTGTGGAAGAGTAGGGAAAAGAGGAAGGCTGTTGATGTGGTGGAGAGCGACGGCCATGAAGCGGCGGCGGCGGAGCTTGTGAGATCGGTTTCGGGGATAGC
TAGAAATGAAGTGGAGGTTGAAAAGGATGGTGGGGAGGAGATGGTGGGTTTGAAGAAGAAGAGCCAGTGTCAGTGTTGGAAGCATCAGTGTGGGATGAAGAAATTGGATA
GAAACCTTAGCACCGTATCCAAAAACTCGAAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGTTGTGGAAGAGTAGGGAAAAGAGGAAGGCTGTTGATGTGGTGGAGAGCGACGGCCATGAAGCGGCGGCGGCGGAGCTTGTGAGATCGGTTTCGGGGATAGC
TAGAAATGAAGTGGAGGTTGAAAAGGATGGTGGGGAGGAGATGGTGGGTTTGAAGAAGAAGAGCCAGTGTCAGTGTTGGAAGCATCAGTGTGGGATGAAGAAATTGGATA
GAAACCTTAGCACCGTATCCAAAAACTCGAAAGGCTAA
Protein sequenceShow/hide protein sequence
MRQLWKSREKRKAVDVVESDGHEAAAAELVRSVSGIARNEVEVEKDGGEEMVGLKKKSQCQCWKHQCGMKKLDRNLSTVSKNSKG