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MS026514 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026514
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin family protein
Genome locationscaffold5:752406..754682
RNA-Seq ExpressionMS026514
SyntenyMS026514
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EYU29190.1 hypothetical protein MIMGU_mgv1a015494mg [Erythranthe guttata]3.7e-2262.83Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSISVI---------------LLIYAGKQLGDDKTAKDYNIEG
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A           D+I  I                LIYAGKQL DDKTAKDYNIEG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSISVI---------------LLIYAGKQLGDDKTAKDYNIEG

Query:  GSVLHLVLALRGG
        GSVLHLVLALRGG
Subjt:  GSVLHLVLALRGG

KAF5749247.1 hypothetical protein HS088_TW04G01212 [Tripterygium wilfordii]4.0e-2476.47Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
        MQIFVKTLTGKTITLEVESSDT+DNVKAKIQ+   +E L + +    + LIYAGKQL DDKTA+DYNIEGGSVLHLVLALRGG L
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL

KAG6387884.1 hypothetical protein SASPL_153079 [Salvia splendens]1.7e-2266.02Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI------------------ERLLYADSISVI--LLIYAGKQLGDDKTAKDYNIEGGSVLHLVLAL
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ +++                   ER+   + I  +   LIYAGKQLGDDKTAKDYNIEGGSVLHLVLAL
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI------------------ERLLYADSISVI--LLIYAGKQLGDDKTAKDYNIEGGSVLHLVLAL

Query:  RGG
        RGG
Subjt:  RGG

RLM56215.1 hypothetical protein C2845_PM10G17510 [Panicum miliaceum]6.8e-2474.73Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ  NR+ +   ++  S++  L      LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG

RLN11761.1 hypothetical protein C2845_PM09G20060 [Panicum miliaceum]8.8e-2476.14Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
        MQIFVKTLTGKTITL+VESSDTIDNVKAKIQ  NR+ +   ++  S++  L   LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG

TrEMBL top hitse value%identityAlignment
A0A022QRQ2 Ubiquitin-like domain-containing protein1.8e-2262.83Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSISVI---------------LLIYAGKQLGDDKTAKDYNIEG
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A           D+I  I                LIYAGKQL DDKTAKDYNIEG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSISVI---------------LLIYAGKQLGDDKTAKDYNIEG

Query:  GSVLHLVLALRGG
        GSVLHLVLALRGG
Subjt:  GSVLHLVLALRGG

A0A3L6PJN4 Ubiquitin-like domain-containing protein3.3e-2474.73Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ  NR+ +   ++  S++  L      LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG

A0A3L6RXW9 Ubiquitin-like domain-containing protein4.3e-2476.14Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
        MQIFVKTLTGKTITL+VESSDTIDNVKAKIQ  NR+ +   ++  S++  L   LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG

A0A7J7DSH1 Ubiquitin-like domain-containing protein1.9e-2476.47Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
        MQIFVKTLTGKTITLEVESSDT+DNVKAKIQ+   +E L + +    + LIYAGKQL DDKTA+DYNIEGGSVLHLVLALRGG L
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL

R7W7L9 Ubiquitin-like domain-containing protein8.6e-2578.16Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A       LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG

SwissProt top hitse value%identityAlignment
P0CG84 Polyubiquitin (Fragment)1.4e-1965.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

P0CG85 Polyubiquitin1.4e-1965.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

P69313 Ubiquitin1.4e-1965.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

P69322 Polyubiquitin1.4e-1965.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

P69325 Polyubiquitin1.4e-1965.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

Arabidopsis top hitse value%identityAlignment
AT4G02890.1 Ubiquitin family protein9.8e-2165.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

AT4G05050.1 ubiquitin 119.8e-2165.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

AT4G05320.2 polyubiquitin 109.8e-2165.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

AT4G05320.3 polyubiquitin 109.8e-2165.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY

AT4G05320.4 polyubiquitin 109.8e-2165.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGAATCGTTCGATGATCGA
GAGGTTGCTCTATGCCGACTCGATTTCAGTTATTTTGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCCAAAGACTACAACATTGAGGGTGGTTCTGTTC
TCCATCTAGTGCTCGCCCTGAGGGGTGGTTATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGAATCGTTCGATGATCGA
GAGGTTGCTCTATGCCGACTCGATTTCAGTTATTTTGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCCAAAGACTACAACATTGAGGGTGGTTCTGTTC
TCCATCTAGTGCTCGCCCTGAGGGGTGGTTATCTGTAA
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL