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MS026548 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026548
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNeurofilament heavy protein, putative
Genome locationscaffold19:582107..582865
RNA-Seq ExpressionMS026548
SyntenyMS026548
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9688307.1 hypothetical protein SADUNF_Sadunf02G0183900 [Salix dunnii]1.6e-2548.18Show/hide
Query:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE
        MVGEES L   VT SSMVGEES LE  V Y++MV     +    T SSMVG ES LE  V  SSM  EE  +   VT +SMVGEES LE   T SSMV E
Subjt:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE

Query:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE-------VETCNNRWVMEEV-------ETCNNKL
        E  + E  T +SMV     +   ET SSM  EES+LE    C+SM EEE ++ EVVTCN+ +V E        VE  +N  V+EE        ET +NK 
Subjt:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE-------VETCNNRWVMEEV-------ETCNNKL

Query:  EMEEACKLALEEVVTCSNKWG----MVEVGTYSSKLELEEVVTCRRM
        E+EE  K   EEV TCS+  G     V V T SSK+ +EEV TC  M
Subjt:  EMEEACKLALEEVVTCSNKWG----MVEVGTYSSKLELEEVVTCRRM

KAG5572083.1 hypothetical protein H5410_061849 [Solanum commersonii]2.6e-1540.32Show/hide
Query:  LEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG
        L E    S+ V EE+   E  + SS V EE  + E VT SS VGE   + E  T SS V EE      VT SS VGE + + E  T SS V EE      
Subjt:  LEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG

Query:  VTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNS-----TLVMEEVETCNNRWVMEE--VETCNNKLEMEEACKLALEEVV
        VT SSMV  E  ++E ETCSS V EE  + E ETCS  V E ++   VVTC+S     T  +EE ETC++R V  +  VETCN+ +E E    + +EE  
Subjt:  VTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNS-----TLVMEEVETCNNRWVMEE--VETCNNKLEMEEACKLALEEVV

Query:  TCSNK-----WGMVEVGTYSSKLELEEVV----TCRRMVVDSRAWAFHTPCKA
        TCS+        MV VGT +S +E E V+    TC    V  +       C +
Subjt:  TCSNK-----WGMVEVGTYSSKLELEEVV----TCRRMVVDSRAWAFHTPCKA

KAG6419869.1 hypothetical protein SASPL_116381 [Salvia splendens]4.0e-2444.22Show/hide
Query:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSS
        MV E   +EE VTYSSMV E   +EE VT +S  G EE+ +EE VTY+SM G EE  +EE VT +S  G EE  +EE VTY+SM G EE   EE VTYSS
Subjt:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSS

Query:  MVGEESRLEEGVTYSSMVG-EESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEEVETCNNRWVMEEVETCNNKLEM--EEACK
        MV E + +EE VT +S  G EE  +E  ETCS+MV    +    ETCSSMV E +++EE VTCNS   +EE+        ME VETC+N + +  E+  +
Subjt:  MVGEESRLEEGVTYSSMVG-EESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEEVETCNNRWVMEEVETCNNKLEM--EEACK

Query:  LALEEVVTCSNKWGMVEVGTYSSKLELEE--VVTCRRMVVDSRAWAFHTPC
             +V       + E  +  + +E+E+  VVTC RMV + +       C
Subjt:  LALEEVVTCSNKWGMVEVGTYSSKLELEE--VVTCRRMVVDSRAWAFHTPC

KAG6422862.1 hypothetical protein SASPL_113244 [Salvia splendens]1.5e-1552.1Show/hide
Query:  EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-
        EE  +EE VTYSS  G EE  +EE VTYSS  G EE+ +EE VT SSMV E   +EE VTYSS  G EE+ +EE VT +SMV E   +EE VT +SM G 
Subjt:  EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-

Query:  EESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE
        EE  +EE VTYSSMV         ETCSSMV          TCSSM   E+    VVTC  T ++EE
Subjt:  EESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE

KEH40672.1 neurofilament heavy protein, putative [Medicago truncatula]1.1e-1636.25Show/hide
Query:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE
        +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E
Subjt:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE

Query:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLV----MEEVETCNNRWV----MEEVETCNNKLEMEEAC
        ++ +E G+  SSMV EE  + E   CSSMV EE  + E   CSSMV EE  + EV  C+S +V    M EV  C++  V    M EV  C++ +  E+  
Subjt:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLV----MEEVETCNNRWV----MEEVETCNNKLEMEEAC

Query:  KLALEEVVTCSN----KWGMVEVGTYSSKLELE----EVVTCRRMVVDSRA
          A+ EV  CS+    +  MVEVG  SS +  E    EV  C  MVV+ +A
Subjt:  KLALEEVVTCSN----KWGMVEVGTYSSKLELE----EVVTCRRMVVDSRA

TrEMBL top hitse value%identityAlignment
A0A072VFT3 Neurofilament heavy protein, putative5.2e-1736.25Show/hide
Query:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE
        +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E++ +E G+  S +V E
Subjt:  MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGE

Query:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLV----MEEVETCNNRWV----MEEVETCNNKLEMEEAC
        ++ +E G+  SSMV EE  + E   CSSMV EE  + E   CSSMV EE  + EV  C+S +V    M EV  C++  V    M EV  C++ +  E+  
Subjt:  ESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLV----MEEVETCNNRWV----MEEVETCNNKLEMEEAC

Query:  KLALEEVVTCSN----KWGMVEVGTYSSKLELE----EVVTCRRMVVDSRA
          A+ EV  CS+    +  MVEVG  SS +  E    EV  C  MVV+ +A
Subjt:  KLALEEVVTCSN----KWGMVEVGTYSSKLELE----EVVTCRRMVVDSRA

A0A4D9C1Y0 Transcription repressor7.5e-1652.1Show/hide
Query:  EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-
        EE  +EE VTYSS  G EE  +EE VTYSS  G EE+ +EE VT SSMV E   +EE VTYSS  G EE+ +EE VT +SMV E   +EE VT +SM G 
Subjt:  EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-EESRLEEGVTYSSMVGEESRLEEGVTYSSMVG-

Query:  EESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE
        EE  +EE VTYSSMV         ETCSSMV          TCSSM   E+    VVTC  T ++EE
Subjt:  EESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEE

A0A6A4NFA1 Uncharacterized protein1.0e-0937.25Show/hide
Query:  MVGEES--------RLEEGV-TYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG
        MVGEE+        RL EGV     MVGE   +EE   Y +M      +E   T   MVGE   +EE  TY  MVGE   +EE   Y +M      +E  
Subjt:  MVGEES--------RLEEGV-TYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG

Query:  VTYSSMVGEESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNST----LVMEEVETCNNR----WVMEEVETCN
         +Y  MVGE   +EE  TY  MV     +E  E C  MV E   +E  ETC  MV E  ++EEV    +T     VME VE+C +      V EE E  +
Subjt:  VTYSSMVGEESRLEEGVTYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNST----LVMEEVETCNNR----WVMEEVETCN

Query:  NKLEMEEACKLALEEVVTCSNKWGMVEVGTYSSKLELEEVVTCRRMV
        N   M  A K+ +E V TC +  G V+         +EE  TCR MV
Subjt:  NKLEMEEACKLALEEVVTCSNKWGMVEVGTYSSKLELEEVVTCRRMV

A0A7J7FT18 Uncharacterized protein3.6e-1037.05Show/hide
Query:  MVGEESRLEEGVTYSSMVGEESRLE-------EGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEES-RLEEGVTYSSMVGEESRLEEGV
        +VG  +R EE V    +VG   R E       E V  +SM      +EE VTYS+ V   +  E   TY+SM  EE  + EEG+  SSM      +EE V
Subjt:  MVGEESRLEEGVTYSSMVGEESRLE-------EGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEES-RLEEGVTYSSMVGEESRLEEGV

Query:  TYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNS----TLVMEEVETCNNRWV----MEEVETCNNKLEM------------
        TYS+        E  ETC+SMV+E +++   ETCS+MV E  ++ EV TCNS     +VM  VETC  + V    M  V TC++ +E+            
Subjt:  TYSSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNS----TLVMEEVETCNNRWV----MEEVETCNNKLEM------------

Query:  EEACKLALEEVVTCSNK----WGMVEVGTYSSK-LELEEVVT---CRRMVV
         E   + +E V TC +K     GMV VG Y+ K  E++E+V    CRR  V
Subjt:  EEACKLALEEVVTCSNK----WGMVEVGTYSSK-LELEEVVT---CRRMVV

A0A7S4M7H3 Hypothetical protein8.0e-1047.01Show/hide
Query:  LEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG
        LEEG    S VGE   LE+G    S VG+   LEEG    S VGE   LEEG    S VGE   LE+G    S VG+   LEEG    S VGE   LEEG
Subjt:  LEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEG

Query:  VTYSSMVGEESRLEEGE
            S VG    L EGE
Subjt:  VTYSSMVGEESRLEEGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGA
GAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGG
AGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTAT
AGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGAGACTTGTAGTAGTATGGTGGAGGAGGAGAGTAAACTGGAGGAGGGGGAGACTTGTAGTAGTATGGTGGA
GGAGGAGAGTATACTGGAGGAGGTGGTGACTTGTAATAGTACACTGGTGATGGAGGAGGTGGAGACTTGTAATAATAGGTGGGTGATGGAGGAGGTGGAGACTTGTAATA
ATAAATTGGAGATGGAGGAGGCTTGTAAACTGGCGTTGGAGGAGGTGGTGACTTGTAGTAATAAGTGGGGGATGGTGGAGGTGGGGACTTATAGTAGTAAATTGGAGTTG
GAGGAGGTGGTGACTTGTAGACGTATGGTGGTGGATAGTAGGGCTTGGGCTTTTCACACTCCTTGTAAGGCTTCTTGGGAGCATAAGCAAAAGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGA
GAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGG
AGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTATAGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGTGACTTAT
AGTAGTATGGTGGGGGAGGAGAGTAGACTGGAGGAGGGGGAGACTTGTAGTAGTATGGTGGAGGAGGAGAGTAAACTGGAGGAGGGGGAGACTTGTAGTAGTATGGTGGA
GGAGGAGAGTATACTGGAGGAGGTGGTGACTTGTAATAGTACACTGGTGATGGAGGAGGTGGAGACTTGTAATAATAGGTGGGTGATGGAGGAGGTGGAGACTTGTAATA
ATAAATTGGAGATGGAGGAGGCTTGTAAACTGGCGTTGGAGGAGGTGGTGACTTGTAGTAATAAGTGGGGGATGGTGGAGGTGGGGACTTATAGTAGTAAATTGGAGTTG
GAGGAGGTGGTGACTTGTAGACGTATGGTGGTGGATAGTAGGGCTTGGGCTTTTCACACTCCTTGTAAGGCTTCTTGGGAGCATAAGCAAAAGGCTTAG
Protein sequenceShow/hide protein sequence
MVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTYSSMVGEESRLEEGVTY
SSMVGEESRLEEGETCSSMVEEESKLEEGETCSSMVEEESILEEVVTCNSTLVMEEVETCNNRWVMEEVETCNNKLEMEEACKLALEEVVTCSNKWGMVEVGTYSSKLEL
EEVVTCRRMVVDSRAWAFHTPCKASWEHKQKA