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MS026600 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026600
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold659:252610..253894
RNA-Seq ExpressionMS026600
SyntenyMS026600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50764.1 hypothetical protein EZV62_023288 [Acer yangbiense]2.6e-1044.05Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL
        KD W+ R G +         +N  V+ L+ Q GRW++ L+   F  +EVE IL IPL  N RED  +W+ DK+G FSIKSAY++
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]4.7e-1223.49Show/hide
Query:  WISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC--------PWATKE-LLE
        W+ R   +  +       +  V+ L+ +   W ++ I  HF +E+  +IL+IPLP+    D+++W+ DK+G +S+KS YQL         P ++KE    
Subjt:  WISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC--------PWATKE-LLE

Query:  WT------VTRSNSKERHKILITA----WQIWKLFREPHQQTL----IPTQEIIKIQRGNPWKKHTECVERKFHQ-LPDGILPGQDCGSSI---LQPGMR
        W+      +   N KE  ++ +       Q +K  + P  Q +    + +QE         +K + +   +  +Q +  GI+     G  I   ++P   
Subjt:  WT------VTRSNSKERHKILITA----WQIWKLFREPHQQTL----IPTQEIIKIQRGNPWKKHTECVERKFHQ-LPDGILPGQDCGSSI---LQPGMR

Query:  IGEL----------GFDAIETKNQNPIYLETNSLEVIGHLHRRTQNLTEIWWQLRDAKRRKEEIQLVLKEHVRRDANGVAH
        +  +          G +  E     P+ +ET+S EV   +  R     EI+W + + +   E ++ V  +H+ R  NG AH
Subjt:  IGEL----------GFDAIETKNQNPIYLETNSLEVIGHLHRRTQNLTEIWWQLRDAKRRKEEIQLVLKEHVRRDANGVAH

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]8.6e-1444.58Show/hide
Query:  DPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL
        DPW+ R GN+  V+    V+N  VA+L+   GRW+E  + + F   E + ILQ PLP   ++D+I+W MDK G+FS++SAY L
Subjt:  DPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL

XP_024033483.1 uncharacterized protein LOC112095606 [Citrus clementina]1.5e-1037.35Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQ
        KD WI +   +  +      ++  VA L+++  +W+E  I+ HF   + +KI++IPLP++ +ED I+W+ DK+GL+S+KS YQ
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQ

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]3.4e-1038.27Show/hide
Query:  WISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL
        WI R   +  +       +  VA L+ +  +W E+LI  HF  E+ E I+QIPLP+  +ED+++W+ DK+G +S+KS YQ+
Subjt:  WISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL

TrEMBL top hitse value%identityAlignment
A0A2N9FPZ2 Uncharacterized protein2.4e-0929.93Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE
        KDPWI    ++ +   +D+ +  P+   + + S    W +EL+   F     E I +I +P   R DKI+W ++K GLFS+KSAY LC   P   +  +E
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE

Query:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN
        W+ + +  + ER K+ +  W+I           ++PT++++  + GN
Subjt:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN

A0A2N9GNN9 Reverse transcriptase domain-containing protein2.4e-0929.93Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE
        KDPWI    ++ +   +D+ +  P+   + + S    W +EL+   F     E I +I +P   R DKI+W ++K GLFS+KSAY LC   P   +  +E
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE

Query:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN
        W+ + +  + ER K+ +  W+I           ++PT++++  + GN
Subjt:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN

A0A2N9H944 UDPGT domain-containing protein2.4e-0929.93Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE
        KDPWI    ++ +   +D+ +  P+   + + S    W +EL+   F     E I +I +P   R DKI+W ++K GLFS+KSAY LC   P   +  +E
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPV---AYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLC---PWATKELLE

Query:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN
        W+ + +  + ER K+ +  W+I           ++PT++++  + GN
Subjt:  WT-VTRSNSKERHKILITAWQIWKLFREPHQQTLIPTQEIIKIQRGN

A0A5C7H1A9 zf-RVT domain-containing protein1.3e-1044.05Show/hide
Query:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL
        KD W+ R G +         +N  V+ L+ Q GRW++ L+   F  +EVE IL IPL  N RED  +W+ DK+G FSIKSAY++
Subjt:  KDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL

A0A6J1DRA0 uncharacterized protein LOC1110224234.2e-1444.58Show/hide
Query:  DPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL
        DPW+ R GN+  V+    V+N  VA+L+   GRW+E  + + F   E + ILQ PLP   ++D+I+W MDK G+FS++SAY L
Subjt:  DPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGAAAGGATCCTTGGATCTCAAGGGCGGGTAATTATTTGTCGGTTTATGTGAGTGATGATGTTAAAAACAACCCAGTGGCGTACCTTTTGAGTCAGCCAGGTCG
ATGGAATGAGGAACTCATTTGGGACCACTTTTGTGAGGAAGAAGTCGAAAAGATATTGCAAATTCCACTTCCTCAAAACGGCAGGGAAGACAAAATTATGTGGAATATGG
ACAAAAGAGGTTTATTTTCTATCAAGAGTGCCTACCAATTATGTCCATGGGCCACTAAGGAACTTTTGGAGTGGACTGTTACAAGGTCAAACAGCAAGGAGAGGCACAAG
ATTTTGATTACAGCATGGCAAATTTGGAAACTATTCAGAGAACCACACCAGCAAACGCTGATACCAACACAGGAAATCATCAAGATCCAACGGGGGAATCCATGGAAAAA
GCACACCGAATGTGTAGAAAGGAAATTTCACCAATTGCCCGATGGAATTCTCCCCGGCCAGGATTGTGGAAGCTCAATACTACAGCCTGGAATGCGGATAGGGGAACTGG
GTTTTGATGCAATTGAGACTAAAAATCAAAATCCCATATACTTGGAGACTAATTCTCTTGAGGTGATTGGGCATCTACACAGGCGAACTCAAAATCTGACTGAAATCTGG
TGGCAACTCCGAGACGCGAAGAGACGAAAGGAAGAGATCCAGCTGGTTTTGAAGGAGCATGTTCGACGAGATGCAAATGGTGTGGCCCATGGTGCACACTTTGACAGTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGAAAGGATCCTTGGATCTCAAGGGCGGGTAATTATTTGTCGGTTTATGTGAGTGATGATGTTAAAAACAACCCAGTGGCGTACCTTTTGAGTCAGCCAGGTCG
ATGGAATGAGGAACTCATTTGGGACCACTTTTGTGAGGAAGAAGTCGAAAAGATATTGCAAATTCCACTTCCTCAAAACGGCAGGGAAGACAAAATTATGTGGAATATGG
ACAAAAGAGGTTTATTTTCTATCAAGAGTGCCTACCAATTATGTCCATGGGCCACTAAGGAACTTTTGGAGTGGACTGTTACAAGGTCAAACAGCAAGGAGAGGCACAAG
ATTTTGATTACAGCATGGCAAATTTGGAAACTATTCAGAGAACCACACCAGCAAACGCTGATACCAACACAGGAAATCATCAAGATCCAACGGGGGAATCCATGGAAAAA
GCACACCGAATGTGTAGAAAGGAAATTTCACCAATTGCCCGATGGAATTCTCCCCGGCCAGGATTGTGGAAGCTCAATACTACAGCCTGGAATGCGGATAGGGGAACTGG
GTTTTGATGCAATTGAGACTAAAAATCAAAATCCCATATACTTGGAGACTAATTCTCTTGAGGTGATTGGGCATCTACACAGGCGAACTCAAAATCTGACTGAAATCTGG
TGGCAACTCCGAGACGCGAAGAGACGAAAGGAAGAGATCCAGCTGGTTTTGAAGGAGCATGTTCGACGAGATGCAAATGGTGTGGCCCATGGTGCACACTTTGACAGTTG
A
Protein sequenceShow/hide protein sequence
MFGKDPWISRAGNYLSVYVSDDVKNNPVAYLLSQPGRWNEELIWDHFCEEEVEKILQIPLPQNGREDKIMWNMDKRGLFSIKSAYQLCPWATKELLEWTVTRSNSKERHK
ILITAWQIWKLFREPHQQTLIPTQEIIKIQRGNPWKKHTECVERKFHQLPDGILPGQDCGSSILQPGMRIGELGFDAIETKNQNPIYLETNSLEVIGHLHRRTQNLTEIW
WQLRDAKRRKEEIQLVLKEHVRRDANGVAHGAHFDS