; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS026618 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026618
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold198:136442..137062
RNA-Seq ExpressionMS026618
SyntenyMS026618
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]1.3e-1227.75Show/hide
Query:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG
        + K   S++   GSP+R+N+L+WI++   V ++E                                            +FNL W +D   + ++ Q+L+G
Subjt:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG

Query:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEA
          L     ++W    KA++ E+W ERNQRIF D +    E  + A   A+ WC+L   F  YS   IC+NW A
Subjt:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEA

KAA0062564.1 GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]4.3e-1141.18Show/hide
Query:  NTAEMFNLAWIWDCVAARNIFQILNGVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAF
        N   +F + W +D     NI QIL G  L     L+W N  KA++S++WFE NQRIF+       E  +IAK  A+ WC L+  F  YS   + +NW AF
Subjt:  NTAEMFNLAWIWDCVAARNIFQILNGVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAF

Query:  IS
        IS
Subjt:  IS

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]4.1e-1427.84Show/hide
Query:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG
        + K   S++   GSP+R+N+L+WI++   VN++E                                            +FNL W +D   + ++ Q+L+G
Subjt:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG

Query:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
          L     ++W    KA++ E+W ERNQRIF D +    E  + A   A+ WC+L   F  YS   IC+NW  F++
Subjt:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]7.0e-2234.43Show/hide
Query:  GADLRLSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEM---------------------------------------------FNLAWIWDCVAARNI
        G++  + K   ++LW   SP+RVN+  WIL  GK+NTA++                                             FN+ W +D  A  N+
Subjt:  GADLRLSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEM---------------------------------------------FNLAWIWDCVAARNI

Query:  FQILNG-VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
        +Q+L+G   L      LW+N  KA++SELWFERN R+F++      E F  AKFKAS WC+L D+F  +SP +I  NW AFI+
Subjt:  FQILNG-VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]3.1e-1732.77Show/hide
Query:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEMFN--------------------------------LAWIWDCVAA-------------RNIFQILN
        L K   S++W   SP+RVN+L+WI+L G++N AE+                                   +W W+ +                N+FQ+L 
Subjt:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEMFN--------------------------------LAWIWDCVAA-------------RNIFQILN

Query:  GVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
                 LLW N  KA++++LWFERNQRIF + + S  +    A+ +AS WC LSD F  YS     +NWEAFIS
Subjt:  GVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

TrEMBL top hitse value%identityAlignment
A0A5A7T2Y0 zf-RVT domain-containing protein6.4e-1327.75Show/hide
Query:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG
        + K   S++   GSP+R+N+L+WI++   V ++E                                            +FNL W +D   + ++ Q+L+G
Subjt:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG

Query:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEA
          L     ++W    KA++ E+W ERNQRIF D +    E  + A   A+ WC+L   F  YS   IC+NW A
Subjt:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEA

A0A5A7V5N8 GPI-anchor transamidase isoform X12.1e-1141.18Show/hide
Query:  NTAEMFNLAWIWDCVAARNIFQILNGVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAF
        N   +F + W +D     NI QIL G  L     L+W N  KA++S++WFE NQRIF+       E  +IAK  A+ WC L+  F  YS   + +NW AF
Subjt:  NTAEMFNLAWIWDCVAARNIFQILNGVRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAF

Query:  IS
        IS
Subjt:  IS

A0A5D3DE60 zf-RVT domain-containing protein2.0e-1427.84Show/hide
Query:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG
        + K   S++   GSP+R+N+L+WI++   VN++E                                            +FNL W +D   + ++ Q+L+G
Subjt:  LSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAE--------------------------------------------MFNLAWIWDCVAARNIFQILNG

Query:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
          L     ++W    KA++ E+W ERNQRIF D +    E  + A   A+ WC+L   F  YS   IC+NW  F++
Subjt:  VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

A0A5D3DZ52 GPI-anchor transamidase isoform X16.9e-0745.59Show/hide
Query:  LLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
        L+W N  KA++S++WFE NQRIF+       E  +IAK  A+ WC L+  F  YS   + +NW AFIS
Subjt:  LLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

A0A6J1DIE2 uncharacterized protein LOC1110207653.4e-2234.43Show/hide
Query:  GADLRLSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEM---------------------------------------------FNLAWIWDCVAARNI
        G++  + K   ++LW   SP+RVN+  WIL  GK+NTA++                                             FN+ W +D  A  N+
Subjt:  GADLRLSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEM---------------------------------------------FNLAWIWDCVAARNI

Query:  FQILNG-VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS
        +Q+L+G   L      LW+N  KA++SELWFERN R+F++      E F  AKFKAS WC+L D+F  +SP +I  NW AFI+
Subjt:  FQILNG-VRLVPKANLLWINGFKAIVSELWFERNQRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGTCGATGGAGTTTGGAAAATTCGGGTCTTTTCTCAGTTTCCTCCTCTTTGTAAGCTTGGAGGAGCTGATTTGCGATTGTCTAAAGCTCACTTATCTTCTCTTTG
GAGTTTGGGTAGCCCAAAACGAGTAAACATGTTAATGTGGATTCTCCTACATGGCAAGGTTAATACAGCTGAGATGTTCAATTTGGCTTGGATTTGGGACTGTGTGGCTG
CTAGAAACATTTTCCAGATTCTCAATGGAGTTAGATTGGTGCCTAAAGCTAATCTGCTTTGGATCAATGGTTTTAAGGCGATTGTTTCAGAGTTATGGTTTGAGAGGAAT
CAAAGGATATTCAAAGATTCCAGCTGTTCAGCAGTTGAATGTTTCAATATTGCCAAATTTAAAGCTTCTCAATGGTGTGCTCTTTCCGATACTTTCTTCCCCTATTCTCC
TGATTTGATTTGTATGAATTGGGAGGCCTTTATATCTCCTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGTCGATGGAGTTTGGAAAATTCGGGTCTTTTCTCAGTTTCCTCCTCTTTGTAAGCTTGGAGGAGCTGATTTGCGATTGTCTAAAGCTCACTTATCTTCTCTTTG
GAGTTTGGGTAGCCCAAAACGAGTAAACATGTTAATGTGGATTCTCCTACATGGCAAGGTTAATACAGCTGAGATGTTCAATTTGGCTTGGATTTGGGACTGTGTGGCTG
CTAGAAACATTTTCCAGATTCTCAATGGAGTTAGATTGGTGCCTAAAGCTAATCTGCTTTGGATCAATGGTTTTAAGGCGATTGTTTCAGAGTTATGGTTTGAGAGGAAT
CAAAGGATATTCAAAGATTCCAGCTGTTCAGCAGTTGAATGTTTCAATATTGCCAAATTTAAAGCTTCTCAATGGTGTGCTCTTTCCGATACTTTCTTCCCCTATTCTCC
TGATTTGATTTGTATGAATTGGGAGGCCTTTATATCTCCTTTGTAG
Protein sequenceShow/hide protein sequence
MLVDGVWKIRVFSQFPPLCKLGGADLRLSKAHLSSLWSLGSPKRVNMLMWILLHGKVNTAEMFNLAWIWDCVAARNIFQILNGVRLVPKANLLWINGFKAIVSELWFERN
QRIFKDSSCSAVECFNIAKFKASQWCALSDTFFPYSPDLICMNWEAFISPL