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MS026619 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026619
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPIR-like protein
Genome locationscaffold198:167398..173083
RNA-Seq ExpressionMS026619
SyntenyMS026619
Gene Ontology termsGO:0000902 - cell morphogenesis (biological process)
GO:0006417 - regulation of translation (biological process)
GO:0030833 - regulation of actin filament polymerization (biological process)
GO:0031209 - SCAR complex (cellular component)
GO:0000340 - RNA 7-methylguanosine cap binding (molecular function)
GO:0031267 - small GTPase binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES82720.2 transcription activators protein [Medicago truncatula]8.0e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

GAU13588.1 hypothetical protein TSUD_346920 [Trifolium subterraneum]8.0e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

RVW41858.1 putative ribonuclease H protein [Vitis vinifera]4.3e-2637.67Show/hide
Query:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYG--------------------
        P+ +  ++EK  R FLW  + +G  +HLIR ++ S+ RE+GGLG G  S RN ALL KW WRF  E S LW  V+ASIYG                    
Subjt:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYG--------------------

Query:  --------------LGCKYS----SWRLPTRRALKEKEVVDMAILLSLLSSVALN-DSDDVRVWSLESSGIFSVRSLSRKVAIVSN-ISKEVFSVSWNSH
                      L C +     SW    RR L + E+  +  L+S L SV L+  S D R WSL SSG FSV+S    ++  SN +        W+S 
Subjt:  --------------LGCKYS----SWRLPTRRALKEKEVVDMAILLSLLSSVALN-DSDDVRVWSLESSGIFSVRSLSRKVAIVSN-ISKEVFSVSWNSH

Query:  CPKRVNFLAWVLLMGKVNTMDTL
         P +V  LAW++  GKVNT D L
Subjt:  CPKRVNFLAWVLLMGKVNTMDTL

XP_022151698.1 protein PIR isoform X1 [Momordica charantia]7.3e-2695.52Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

XP_039683990.1 protein PIR isoform X2 [Medicago truncatula]8.0e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

TrEMBL top hitse value%identityAlignment
A0A1S2XWJ9 protein PIR isoform X13.9e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

A0A2K3NLM1 PIR-like protein3.9e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

A0A438E2D1 Putative ribonuclease H protein2.1e-2637.67Show/hide
Query:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYG--------------------
        P+ +  ++EK  R FLW  + +G  +HLIR ++ S+ RE+GGLG G  S RN ALL KW WRF  E S LW  V+ASIYG                    
Subjt:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYG--------------------

Query:  --------------LGCKYS----SWRLPTRRALKEKEVVDMAILLSLLSSVALN-DSDDVRVWSLESSGIFSVRSLSRKVAIVSN-ISKEVFSVSWNSH
                      L C +     SW    RR L + E+  +  L+S L SV L+  S D R WSL SSG FSV+S    ++  SN +        W+S 
Subjt:  --------------LGCKYS----SWRLPTRRALKEKEVVDMAILLSLLSSVALN-DSDDVRVWSLESSGIFSVRSLSRKVAIVSN-ISKEVFSVSWNSH

Query:  CPKRVNFLAWVLLMGKVNTMDTL
         P +V  LAW++  GKVNT D L
Subjt:  CPKRVNFLAWVLLMGKVNTMDTL

A0A6J1DCX5 protein PIR isoform X13.5e-2695.52Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

G7L2Z6 Transcription activators protein3.9e-2591.04Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGPGVWVSTERGATESPIEYCDV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.8e-0931.52Show/hide
Query:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYGLG-CKYSSWRLP
        P  ++ +L++  R+FLWG +++    HL++       ++ GGLG+      N+AL++K GWR   E ++LW  V+   Y +G  + S W +P
Subjt:  PMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGIGNLSKRNKALLAKWGWRFSVETSALWRSVVASIYGLG-CKYSSWRLP

Q5S2C3 Protein PIR7.8e-2382.09Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGP V VS ER AT+SPIEY DV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

Arabidopsis top hitse value%identityAlignment
AT5G18410.1 transcription activators5.5e-2482.09Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGP V VS ER AT+SPIEY DV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

AT5G18410.2 transcription activators5.5e-2482.09Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGP V VS ER AT+SPIEY DV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM

AT5G18410.3 transcription activators5.5e-2482.09Show/hide
Query:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM
        MAVPVEEAIAALSTFSLEDEQPE+QGP V VS ER AT+SPIEY DV+AYRLSL+EDTKALNQL  +
Subjt:  MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCCCTCTCAACATTCTCCCTCGAGGATGAGCAGCCGGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGC
AACTGAGAGCCCAATAGAGTATTGTGATGTTTCTGCTTACCGTCTATCTCTAGCAGAAGACACAAAAGCTCTCAATCAGTTGGGCCCGATGAGAGTTATAAAGCAGTTGG
AGAAAAGTATCCGCTCTTTCCTTTGGGGAGATTCTTCAAAAGGCTCGGTGAATCATCTAATAAGGTTGGATATTTCTTCTCAAGCTAGAGAGGTCGGAGGTCTGGGTATT
GGAAATCTCTCCAAAAGGAATAAAGCCTTGTTAGCCAAATGGGGTTGGAGATTTAGTGTGGAAACGTCAGCTCTTTGGCGATCAGTGGTGGCTAGCATTTACGGCTTGGG
ATGTAAATATTCCTCTTGGAGGCTGCCTACTAGGCGTGCTTTGAAGGAGAAGGAGGTTGTGGATATGGCCATTCTTTTATCACTTCTTTCTTCAGTTGCCCTTAATGATT
CTGATGATGTTAGGGTTTGGAGTTTGGAGTCTTCGGGCATCTTCTCTGTTCGTTCGTTAAGCAGGAAAGTGGCTATTGTTTCCAACATTTCCAAGGAGGTTTTTTCAGTC
TCATGGAATTCTCATTGCCCTAAGAGGGTCAATTTTCTGGCTTGGGTCCTTCTTATGGGCAAGGTCAATACTATGGATACTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCCCTCTCAACATTCTCCCTCGAGGATGAGCAGCCGGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGC
AACTGAGAGCCCAATAGAGTATTGTGATGTTTCTGCTTACCGTCTATCTCTAGCAGAAGACACAAAAGCTCTCAATCAGTTGGGCCCGATGAGAGTTATAAAGCAGTTGG
AGAAAAGTATCCGCTCTTTCCTTTGGGGAGATTCTTCAAAAGGCTCGGTGAATCATCTAATAAGGTTGGATATTTCTTCTCAAGCTAGAGAGGTCGGAGGTCTGGGTATT
GGAAATCTCTCCAAAAGGAATAAAGCCTTGTTAGCCAAATGGGGTTGGAGATTTAGTGTGGAAACGTCAGCTCTTTGGCGATCAGTGGTGGCTAGCATTTACGGCTTGGG
ATGTAAATATTCCTCTTGGAGGCTGCCTACTAGGCGTGCTTTGAAGGAGAAGGAGGTTGTGGATATGGCCATTCTTTTATCACTTCTTTCTTCAGTTGCCCTTAATGATT
CTGATGATGTTAGGGTTTGGAGTTTGGAGTCTTCGGGCATCTTCTCTGTTCGTTCGTTAAGCAGGAAAGTGGCTATTGTTTCCAACATTTCCAAGGAGGTTTTTTCAGTC
TCATGGAATTCTCATTGCCCTAAGAGGGTCAATTTTCTGGCTTGGGTCCTTCTTATGGGCAAGGTCAATACTATGGATACTCTTTAG
Protein sequenceShow/hide protein sequence
MAVPVEEAIAALSTFSLEDEQPELQGPGVWVSTERGATESPIEYCDVSAYRLSLAEDTKALNQLGPMRVIKQLEKSIRSFLWGDSSKGSVNHLIRLDISSQAREVGGLGI
GNLSKRNKALLAKWGWRFSVETSALWRSVVASIYGLGCKYSSWRLPTRRALKEKEVVDMAILLSLLSSVALNDSDDVRVWSLESSGIFSVRSLSRKVAIVSNISKEVFSV
SWNSHCPKRVNFLAWVLLMGKVNTMDTL