; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS026751 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026751
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold424:121479..127757
RNA-Seq ExpressionMS026751
SyntenyMS026751
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]5.6e-2635.2Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG
        PW  I ++  DF  F  F V +G RI+FW+D W GD S   RFP L ++   K+  ++    +   + WNFN R+ L D ++E    LM+ L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG

Query:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          DK  W+L     FT KS FL L++++         L+W   +  KIK F+W +A++ +NT++ LQ +     +SP +C L +   E VDHLFLH
Subjt:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

RVW20986.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]8.6e-2732.65Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVAD-CWNNEHYDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F + +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +N  + WNFN R+ LFD ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVAD-CWNNEHYDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L   + FT KS F+ L++M           +W   +  K+K F+W +A++ +NT++ LQ +  +  +S  +C L ++  E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]5.6e-2635.68Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG
        PW  I ++  DF  F  F V +G RI+FW+D W GD S   RFP L ++   K+  ++    +   + WNFN R+ L D ++E    LM+ L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG

Query:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLI---TLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          DK  W+L     FT KS FL L++++     PL+    L+W   +  KIK F+W +A++ +NT + LQ +     +SP +C L +   E VDHLFLH
Subjt:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLI---TLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

RVW59655.1 putative ribonuclease H protein [Vitis vinifera]4.3e-2633.67Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F V +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +   + WNFN R  L D ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L     FT KS F  L++M       L   +WK  +  K+K F+W +A++ +NT++ LQ +  +  +SP +C L +   E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

RVW70297.1 putative ribonuclease H protein [Vitis vinifera]4.3e-2633.67Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F V +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +   + WNFN R  L D ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L     FT KS F  L++M       L   +WK  +  K+K F+W +A++ +NT++ LQ +  +  +SP +C L +   E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

TrEMBL top hitse value%identityAlignment
A0A438CDE2 LINE-1 retrotransposable element ORF2 protein4.2e-2732.65Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVAD-CWNNEHYDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F + +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +N  + WNFN R+ LFD ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVAD-CWNNEHYDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L   + FT KS F+ L++M           +W   +  K+K F+W +A++ +NT++ LQ +  +  +S  +C L ++  E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

A0A438CWE0 Putative ribonuclease H protein2.7e-2635.68Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG
        PW  I ++  DF  F  F V +G RI+FW+D W GD S   RFP L ++   K+  ++    +   + WNFN R+ L D ++E    LM+ L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG

Query:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLI---TLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          DK  W+L     FT KS FL L++++     PL+    L+W   +  KIK F+W +A++ +NT + LQ +     +SP +C L +   E VDHLFLH
Subjt:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLI---TLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

A0A438FI32 Putative ribonuclease H protein2.1e-2633.67Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F V +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +   + WNFN R  L D ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L     FT KS F  L++M       L   +WK  +  K+K F+W +A++ +NT++ LQ +  +  +SP +C L +   E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

A0A438GDL2 Putative ribonuclease H protein2.1e-2633.67Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-
        PW  I ++  DF  +  F V +G+RI+FW+D W GD  F+ ++P L+++ T K+  ++    +   + WNFN R  L D ++E   RLM  L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEV-

Query:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          D   W+L     FT KS F  L++M       L   +WK  +  K+K F+W +A++ +NT++ LQ +  +  +SP +C L +   E+ DHLFLH
Subjt:  GDDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

A5BPI6 Uncharacterized protein2.7e-2635.2Show/hide
Query:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG
        PW  I ++  DF  F  F V +G RI+FW+D W GD S   RFP L ++   K+  ++    +   + WNFN R+ L D ++E    LM+ L+       
Subjt:  PWMEIEKMSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEH-YDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVG

Query:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH
          DK  W+L     FT KS FL L++++         L+W   +  KIK F+W +A++ +NT++ LQ +     +SP +C L +   E VDHLFLH
Subjt:  -DDKVEWALGREKRFTTKSMFLKLTEMTPFLKSPLITLIWKFSLR-KIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGTTTGGAAGTCAATGGTTGCCCGAACCTAGTTGAGATTTCTGGGCTTCATGAGTTGTTGCCATTTATGCAAGAAATTAATTTGAAGGGGAGTAGCAAGATGAA
GCAATGGTTCAAAGAAAACAACTTACAGGGATGGACTATTAGTGGATTTGGCGTTTCCGATTTGGTGGCCCGTGGATTGGGCGCAGTTGATCTTTCCATTGTTGACCCTT
CAATCGATGTTTTACATCGCAGATGTATATGGTGTCCTAATTGCGGGCCTCGTCGCTCGGTGTATCTTGAAGCGGCTCAAAAAGTTTATTTTGATCTAGGACTTATGATT
TGCGACACCAGAGGTGCAGTTGTATTTTACACAAAGGGTACGATTCCAACCGAAGAAGGTGTCACAAGGAATGATGTTGTAAATTCAATTGAAGATCGAATATGGGACAA
CCAATTCAAAGTAGAAGATGGTCCCAATGACATAACCCACACCATTGGACAAACTAAAAACTTTGATTTTTCAGGACGGTCTCCAGATGGGCGGTTCATGCATCTTAAAA
TACACATAGACGGCAATAGATGGCTGCCACCAACATCTAGAGGGGCTACTAAGGGGAGGCCTTGGATGGAAATTGCGAAGATGGGGAGGCCTTGGATGGAAATTGAGAAG
ATGAGCACTGATTTTATGAACTTTATTTCGTTCAAGGTGAAAAACGGGCAAAGGATCAAATTTTGGAAGGACTCTTGGCTGGGAGATATTTCCTTTGAAAGCAGATTTCC
AGATTTATATAAAATATCAACCAAGAAAGATTGTACTGTGGCTGATTGTTGGAACAATGAGCACTACGATTGGAACTTCAATCTAAGAAAAGGTCTTTTCGATAGAAAGG
TGGAGAGCTCGTTGAGATTGATGGAGATGCTAAACTCTTTTAGATGGGAGGTGGGTGATGACAAGGTGGAATGGGCTTTGGGCAGAGAGAAACGTTTTACCACCAAATCT
ATGTTCCTAAAGCTTACGGAAATGACTCCCTTTCTAAAGTCCCCTCTGATTACTTTGATTTGGAAATTCTCTCTGAGAAAGATCAAAGTCTTTCTTTGGAGCATAGCTTA
CAGAAGTCTAAATACTCATGAGAAATTGCAGAAGAAGCTTCAAAATTGGATGATTTCTCCTTCTGTGTGCTCCCTTTGGCTTAGAAATGAGGAGAACGTTGATCATTTGT
TTCTCCATTGGATGGACTATTACTGGAATTGCCGTTTCCGATTTGATGACACGTGGATTGGGCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGTTTGGAAGTCAATGGTTGCCCGAACCTAGTTGAGATTTCTGGGCTTCATGAGTTGTTGCCATTTATGCAAGAAATTAATTTGAAGGGGAGTAGCAAGATGAA
GCAATGGTTCAAAGAAAACAACTTACAGGGATGGACTATTAGTGGATTTGGCGTTTCCGATTTGGTGGCCCGTGGATTGGGCGCAGTTGATCTTTCCATTGTTGACCCTT
CAATCGATGTTTTACATCGCAGATGTATATGGTGTCCTAATTGCGGGCCTCGTCGCTCGGTGTATCTTGAAGCGGCTCAAAAAGTTTATTTTGATCTAGGACTTATGATT
TGCGACACCAGAGGTGCAGTTGTATTTTACACAAAGGGTACGATTCCAACCGAAGAAGGTGTCACAAGGAATGATGTTGTAAATTCAATTGAAGATCGAATATGGGACAA
CCAATTCAAAGTAGAAGATGGTCCCAATGACATAACCCACACCATTGGACAAACTAAAAACTTTGATTTTTCAGGACGGTCTCCAGATGGGCGGTTCATGCATCTTAAAA
TACACATAGACGGCAATAGATGGCTGCCACCAACATCTAGAGGGGCTACTAAGGGGAGGCCTTGGATGGAAATTGCGAAGATGGGGAGGCCTTGGATGGAAATTGAGAAG
ATGAGCACTGATTTTATGAACTTTATTTCGTTCAAGGTGAAAAACGGGCAAAGGATCAAATTTTGGAAGGACTCTTGGCTGGGAGATATTTCCTTTGAAAGCAGATTTCC
AGATTTATATAAAATATCAACCAAGAAAGATTGTACTGTGGCTGATTGTTGGAACAATGAGCACTACGATTGGAACTTCAATCTAAGAAAAGGTCTTTTCGATAGAAAGG
TGGAGAGCTCGTTGAGATTGATGGAGATGCTAAACTCTTTTAGATGGGAGGTGGGTGATGACAAGGTGGAATGGGCTTTGGGCAGAGAGAAACGTTTTACCACCAAATCT
ATGTTCCTAAAGCTTACGGAAATGACTCCCTTTCTAAAGTCCCCTCTGATTACTTTGATTTGGAAATTCTCTCTGAGAAAGATCAAAGTCTTTCTTTGGAGCATAGCTTA
CAGAAGTCTAAATACTCATGAGAAATTGCAGAAGAAGCTTCAAAATTGGATGATTTCTCCTTCTGTGTGCTCCCTTTGGCTTAGAAATGAGGAGAACGTTGATCATTTGT
TTCTCCATTGGATGGACTATTACTGGAATTGCCGTTTCCGATTTGATGACACGTGGATTGGGCGCTGA
Protein sequenceShow/hide protein sequence
MFSLEVNGCPNLVEISGLHELLPFMQEINLKGSSKMKQWFKENNLQGWTISGFGVSDLVARGLGAVDLSIVDPSIDVLHRRCIWCPNCGPRRSVYLEAAQKVYFDLGLMI
CDTRGAVVFYTKGTIPTEEGVTRNDVVNSIEDRIWDNQFKVEDGPNDITHTIGQTKNFDFSGRSPDGRFMHLKIHIDGNRWLPPTSRGATKGRPWMEIAKMGRPWMEIEK
MSTDFMNFISFKVKNGQRIKFWKDSWLGDISFESRFPDLYKISTKKDCTVADCWNNEHYDWNFNLRKGLFDRKVESSLRLMEMLNSFRWEVGDDKVEWALGREKRFTTKS
MFLKLTEMTPFLKSPLITLIWKFSLRKIKVFLWSIAYRSLNTHEKLQKKLQNWMISPSVCSLWLRNEENVDHLFLHWMDYYWNCRFRFDDTWIGR