; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS026782 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026782
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHTH myb-type domain-containing protein
Genome locationscaffold300:324088..325176
RNA-Seq ExpressionMS026782
SyntenyMS026782
Gene Ontology termsGO:0009723 - response to ethylene (biological process)
GO:0009733 - response to auxin (biological process)
GO:0009739 - response to gibberellin (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRP83281.1 hypothetical protein PROFUN_09493 [Planoprotostelium fungivorum]6.3e-0659.09Show/hide
Query:  WTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF
        WT++E   F  GL IHG G WK+IA +VGT+T  Q+ SHAQKYF
Subjt:  WTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF

TKY45598.1 Transcription factor DIVARICATA [Spatholobus suberectus]2.8e-0663.83Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKH
        RWT++E   F  GLEI G G+WK IA+ V TRT  QVASHAQKYF H
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKH

TMW96798.1 hypothetical protein EJD97_006769, partial [Solanum chilense]6.3e-0648Show/hide
Query:  LPERADPEL-SRRNYGRQLQFRAGR-WTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHRQVASHAQKYFKHPE
        LP  A+ E+ + +N    +Q+R G  WT++E  SF  GL+I+G G+W+ I+   V TRT  QVASHAQKYFK  E
Subjt:  LPERADPEL-SRRNYGRQLQFRAGR-WTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHRQVASHAQKYFKHPE

XP_015057414.1 probable transcription factor At5g61620 [Solanum pennellii]3.7e-0638.18Show/hide
Query:  NALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNY-GRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHR
        N  + +KI+  F    TT  T  TTT S                A   +S +++ GR++  +  RWT+ E+ +F  GL+ HG GNW  IA + V +RT  
Subjt:  NALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNY-GRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHR

Query:  QVASHAQKYF
        QVASHAQKYF
Subjt:  QVASHAQKYF

XP_022145130.1 transcription factor DIVARICATA-like [Momordica charantia]2.3e-0836.06Show/hide
Query:  QLDEAMQCSPLPISTSNSPNALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHG
        ++ + MQ     +++ N+P+ +   ++ SD + A T      TTTN L  L   SSA+NLPER   E +             RWT+ E   F  GLE +G
Subjt:  QLDEAMQCSPLPISTSNSPNALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHG

Query:  PGNWKQIA-ELVGTRTHRQVASHAQKYFKHPEN-----------RPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPPPP---QPFTVTSYYR
         GNWK+IA E V TRT  QVASHAQKY K+ +N           R     F +T+  P            P   QP       P PP   Q FT+T+YY 
Subjt:  PGNWKQIA-ELVGTRTHRQVASHAQKYFKHPEN-----------RPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPPPP---QPFTVTSYYR

Query:  PPPDHQRN
         PP HQ+N
Subjt:  PPPDHQRN

TrEMBL top hitse value%identityAlignment
A0A067CMU6 HTH myb-type domain-containing protein4.0e-0641.94Show/hide
Query:  METEPTTTNSLCDLQSYSSAMNLP---ERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF
        M+  PTTT S     S S +M +P   E+  P  S+++ G       GRWT +E ESF  GL ++G   WK++A  + TRT  Q+ SHAQKYF
Subjt:  METEPTTTNSLCDLQSYSSAMNLP---ERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF

A0A2P6NH67 HTH myb-type domain-containing protein3.1e-0659.09Show/hide
Query:  WTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF
        WT++E   F  GL IHG G WK+IA +VGT+T  Q+ SHAQKYF
Subjt:  WTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF

A0A6J1CTL3 transcription factor DIVARICATA-like1.1e-0836.06Show/hide
Query:  QLDEAMQCSPLPISTSNSPNALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHG
        ++ + MQ     +++ N+P+ +   ++ SD + A T      TTTN L  L   SSA+NLPER   E +             RWT+ E   F  GLE +G
Subjt:  QLDEAMQCSPLPISTSNSPNALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHG

Query:  PGNWKQIA-ELVGTRTHRQVASHAQKYFKHPEN-----------RPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPPPP---QPFTVTSYYR
         GNWK+IA E V TRT  QVASHAQKY K+ +N           R     F +T+  P            P   QP       P PP   Q FT+T+YY 
Subjt:  PGNWKQIA-ELVGTRTHRQVASHAQKYFKHPEN-----------RPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPPPP---QPFTVTSYYR

Query:  PPPDHQRN
         PP HQ+N
Subjt:  PPPDHQRN

A0A6N2BSH5 Uncharacterized protein (Fragment)3.1e-0648Show/hide
Query:  LPERADPEL-SRRNYGRQLQFRAGR-WTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHRQVASHAQKYFKHPE
        LP  A+ E+ + +N    +Q+R G  WT++E  SF  GL+I+G G+W+ I+   V TRT  QVASHAQKYFK  E
Subjt:  LPERADPEL-SRRNYGRQLQFRAGR-WTQQEKESFSSGLEIHGPGNWKQIA-ELVGTRTHRQVASHAQKYFKHPE

A0A7S3ZZK7 Hypothetical protein4.0e-0654.1Show/hide
Query:  LSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFK
        LSR +   + Q  +GRW+ QE   F  GLE +G   W +IAE VGTRT  QV SHAQKYFK
Subjt:  LSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFK

SwissProt top hitse value%identityAlignment
Q5RGA4 Histone H2A deubiquitinase MYSM12.5e-0548.21Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQP
        RW ++EKE F  GL   G   W +IA+L+GTRT  QV S+A++YFK   N+P  +P
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQP

Q869R9 Myb-like protein J1.4e-0850Show/hide
Query:  GRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF
        G++   + G WT++E   F +G++IHG G WK+IA+ VGTRT  Q+ SHAQKY+
Subjt:  GRQLQFRAGRWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF

Arabidopsis top hitse value%identityAlignment
AT1G01060.1 Homeodomain-like superfamily protein7.5e-0538.89Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP
        RWT+ E E F   L ++G   W++I E +GT+T  Q+ SHAQK+F   E    V+   V        PPP+P
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP

AT1G01060.2 Homeodomain-like superfamily protein7.5e-0538.89Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP
        RWT+ E E F   L ++G   W++I E +GT+T  Q+ SHAQK+F   E    V+   V        PPP+P
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP

AT1G01060.3 Homeodomain-like superfamily protein7.5e-0538.89Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP
        RWT+ E E F   L ++G   W++I E +GT+T  Q+ SHAQK+F   E    V+   V        PPP+P
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP

AT1G01060.4 Homeodomain-like superfamily protein7.5e-0538.89Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP
        RWT+ E E F   L ++G   W++I E +GT+T  Q+ SHAQK+F   E    V+   V        PPP+P
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYP---PPPQP

AT1G18330.1 Homeodomain-like superfamily protein1.3e-0432.61Show/hide
Query:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF-KHPENRPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPP
        +W+++E + F   ++++G G W+QI E +GT+T  Q+ SHAQK+F K  +        +V +   PPP+P    ++  P   P   T   PP
Subjt:  RWTQQEKESFSSGLEIHGPGNWKQIAELVGTRTHRQVASHAQKYF-KHPENRPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTGTTTTCCTCCCCCGATTTCCACTCCTAATTCTCCCAATGCGTTGCAGTTTCAGAAGATACTCTCCGACTACAAGGCCGCCGCCATGGTGGATACGACAGTAAC
AAGGCCGCCTTCTCCGGTGGACGAGCAGCGTGCGAGGGCCGCCGCAATAGTCCTCACAGATCACGACCTCCAGCTTCAGTTCATGAACAGTCCTTCTCCACCGATTGCGA
TGGAATTCATCAACTGCGACACTCCCAATTCTCCGACGGCGTTGCAGGAGCTATTATTCTCCAGCGACGCCGCCAACACGACAATGGAAGATATGTATTTTGATGTGGAG
CAGTGTGGGACAGATTTCCAGCAGCTTGATGAGGCGATGCAGTGTTCTCCTCTGCCGATTTCCACTTCTAATTCTCCCAATGCGTTGCAGTTTCAGAAGATACTCTCCGA
CTTTGAGGCCGCCAACACGACAATGGAGACGGAGCCAACAACAACAAACTCTCTTTGCGACCTCCAGAGTTACAGCTCGGCAATGAATTTGCCGGAAAGAGCTGATCCTG
AATTATCTAGGAGGAACTACGGTCGACAACTCCAGTTCCGTGCCGGGCGTTGGACGCAACAGGAAAAAGAGTCATTTTCTAGTGGATTGGAGATTCATGGACCAGGGAAC
TGGAAACAGATTGCGGAATTGGTGGGCACAAGAACACACAGGCAGGTGGCCAGCCATGCCCAAAAGTACTTCAAGCACCCTGAAAACCGGCCACCTGTTCAACCATTTAC
AGTTACCAGTTACTATCCTCCGCCACCGCAACCATTTACAGTTACCAGTTACGATCCTCCGCCACCGCAACCATTTACAGTTACCAGTTACGATCCTCCGCCACCGCAAC
CATTTACAGTTACCAGTTACTATCGTCCGCCACCTGATCACCAACGAAACTANGATCCTCCGCCACCTGATCACCAACGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTGTTTTCCTCCCCCGATTTCCACTCCTAATTCTCCCAATGCGTTGCAGTTTCAGAAGATACTCTCCGACTACAAGGCCGCCGCCATGGTGGATACGACAGTAAC
AAGGCCGCCTTCTCCGGTGGACGAGCAGCGTGCGAGGGCCGCCGCAATAGTCCTCACAGATCACGACCTCCAGCTTCAGTTCATGAACAGTCCTTCTCCACCGATTGCGA
TGGAATTCATCAACTGCGACACTCCCAATTCTCCGACGGCGTTGCAGGAGCTATTATTCTCCAGCGACGCCGCCAACACGACAATGGAAGATATGTATTTTGATGTGGAG
CAGTGTGGGACAGATTTCCAGCAGCTTGATGAGGCGATGCAGTGTTCTCCTCTGCCGATTTCCACTTCTAATTCTCCCAATGCGTTGCAGTTTCAGAAGATACTCTCCGA
CTTTGAGGCCGCCAACACGACAATGGAGACGGAGCCAACAACAACAAACTCTCTTTGCGACCTCCAGAGTTACAGCTCGGCAATGAATTTGCCGGAAAGAGCTGATCCTG
AATTATCTAGGAGGAACTACGGTCGACAACTCCAGTTCCGTGCCGGGCGTTGGACGCAACAGGAAAAAGAGTCATTTTCTAGTGGATTGGAGATTCATGGACCAGGGAAC
TGGAAACAGATTGCGGAATTGGTGGGCACAAGAACACACAGGCAGGTGGCCAGCCATGCCCAAAAGTACTTCAAGCACCCTGAAAACCGGCCACCTGTTCAACCATTTAC
AGTTACCAGTTACTATCCTCCGCCACCGCAACCATTTACAGTTACCAGTTACGATCCTCCGCCACCGCAACCATTTACAGTTACCAGTTACGATCCTCCGCCACCGCAAC
CATTTACAGTTACCAGTTACTATCGTCCGCCACCTGATCACCAACGAAACTANGATCCTCCGCCACCTGATCACCAACGAAACTAG
Protein sequenceShow/hide protein sequence
MQCFPPPISTPNSPNALQFQKILSDYKAAAMVDTTVTRPPSPVDEQRARAAAIVLTDHDLQLQFMNSPSPPIAMEFINCDTPNSPTALQELLFSSDAANTTMEDMYFDVE
QCGTDFQQLDEAMQCSPLPISTSNSPNALQFQKILSDFEAANTTMETEPTTTNSLCDLQSYSSAMNLPERADPELSRRNYGRQLQFRAGRWTQQEKESFSSGLEIHGPGN
WKQIAELVGTRTHRQVASHAQKYFKHPENRPPVQPFTVTSYYPPPPQPFTVTSYDPPPPQPFTVTSYDPPPPQPFTVTSYYRPPPDHQRNXDPPPPDHQRN