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MS026832 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026832
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionchalcone synthase-like
Genome locationscaffold983:570394..570846
RNA-Seq ExpressionMS026832
SyntenyMS026832
Gene Ontology termsGO:0030639 - polyketide biosynthetic process (biological process)
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups (molecular function)
InterPro domainsIPR001099 - Chalcone/stilbene synthase, N-terminal
IPR011141 - Polyketide synthase, type III
IPR016039 - Thiolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002299197.3 chalcone synthase [Populus trichocarpa]2.0e-3161.26Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI
        +  ++QQGC  A  ALRL+KD+AE N GARVL+V  +  T+ F APSETHLDILVG AIFSDGAAA+++GADPD A ER LF++VSA Q ++P S+DG++
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI

Query:  GNLREMGLSYH
        G++REMG+SY+
Subjt:  GNLREMGLSYH

XP_018807682.1 chalcone synthase-like [Juglans regia]7.0e-3262.96Show/hide
Query:  VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNL
        ++QQGC+A G ALRLAKD+AE N  ARVLVV  +  TM FH PSE+HLDIL+GQAIFSDGAAA ++GA PD   E  LFE++ A+Q ++P +EDGV+G L
Subjt:  VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNL

Query:  REMGLSYH
        REMG++YH
Subjt:  REMGLSYH

XP_020204229.1 chalcone synthase [Cajanus cajan]4.5e-3161.54Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP ++   ++QQGC A G  LRLAKD+AE N GARVLVV  +I  + F  PSETHLD LVGQA+F DGAAAV++GADPD AVER LFE+VSA+Q +LP 
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        S+  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

XP_022141572.1 chalcone synthase-like [Momordica charantia]2.4e-3267.8Show/hide
Query:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP   K  +FQ GCHAA  ALRLAKDVAE N GARVLVV VD  T+ FHAP + H+D+LVG AIFSDGAAAVV+GADPDAAVER LF+IVSA Q ++P 
Subjt:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SE-DGVIGNLREMGLSYH
        +E DGV  +++EMGL YH
Subjt:  SE-DGVIGNLREMGLSYH

XP_031250285.1 chalcone synthase-like [Pistacia vera]7.0e-3259.65Show/hide
Query:  PLRPKIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSE
        P   ++ ++Q GC AAG ALRLAKD+AE N GARVLVVS ++  + FHAPS+T+LD++VG A+F DGAAAV++GADP+   ER LFE+VSA+Q+L+P S 
Subjt:  PLRPKIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSE

Query:  DGVIGNLREMGLSY
        DG++G++REMGL Y
Subjt:  DGVIGNLREMGLSY

TrEMBL top hitse value%identityAlignment
A0A151R6F9 Chalcone synthase2.2e-3161.54Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP ++   ++QQGC A G  LRLAKD+AE N GARVLVV  +I  + F  PSETHLD LVGQA+F DGAAAV++GADPD AVER LFE+VSA+Q +LP 
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        S+  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

A0A2I4DKM4 chalcone synthase-like3.4e-3262.96Show/hide
Query:  VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNL
        ++QQGC+A G ALRLAKD+AE N  ARVLVV  +  TM FH PSE+HLDIL+GQAIFSDGAAA ++GA PD   E  LFE++ A+Q ++P +EDGV+G L
Subjt:  VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNL

Query:  REMGLSYH
        REMG++YH
Subjt:  REMGLSYH

A0A2K2BRH8 Uncharacterized protein9.9e-3261.26Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI
        +  ++QQGC  A  ALRL+KD+AE N GARVL+V  +  T+ F APSETHLDILVG AIFSDGAAA+++GADPD A ER LF++VSA Q ++P S+DG++
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI

Query:  GNLREMGLSYH
        G++REMG+SY+
Subjt:  GNLREMGLSYH

A0A2N9GA01 Uncharacterized protein9.9e-3250.68Show/hide
Query:  MGAAHLKDYTSHRLHILKQFHARTRPYTLQPPRTEPLRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQA
        MG  HLK  T + LH   Q          Q  +   L P +    ++ QGC+A G ALRLAKD+AE N GARVLVV  D+ TM+FH PSETHLDIL+GQA
Subjt:  MGAAHLKDYTSHRLHILKQFHARTRPYTLQPPRTEPLRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQA

Query:  IFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNLREM
        +F+DGA A +IGA+PD ++E  LFE++ A Q ++P SE G++G++REM
Subjt:  IFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVIGNLREM

A0A6J1CK67 chalcone synthase-like1.2e-3267.8Show/hide
Query:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP   K  +FQ GCHAA  ALRLAKDVAE N GARVLVV VD  T+ FHAP + H+D+LVG AIFSDGAAAVV+GADPDAAVER LF+IVSA Q ++P 
Subjt:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SE-DGVIGNLREMGLSYH
        +E DGV  +++EMGL YH
Subjt:  SE-DGVIGNLREMGLSYH

SwissProt top hitse value%identityAlignment
O23729 Chalcone synthase 35.0e-3358.97Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP +    ++QQGC A G  LRLAKD+AE N GARVLVV  +I  + F  PSE+HLD LVGQA+F DGAAA+++G+DPD+A ER LF++VSASQ +LP 
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        SE  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

O23730 Chalcone synthase 45.0e-3358.97Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP +    ++QQGC A G  LRLAKD+AE N GARVLVV  +I  + F  PSE+HLD LVGQA+F DGAAA+++G+DPD+A ER LF++VSASQ +LP 
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        SE  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

O23731 Chalcone synthase 85.0e-3358.97Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP +    ++QQGC A G  LRLAKD+AE N GARVLVV  +I  + F  PSE+HLD LVGQA+F DGAAA+++G+DPD+A ER LF++VSASQ +LP 
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        SE  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

Q8H4L3 Chalcone synthase 25.0e-3361.61Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPD-AAVERALFEIVSASQRLLPGSEDGV
        ++ ++QQGC A G  LR+AKD+AE N GARVLVV  +I  M F  PSE+HLD LVG A+F DGAAAV++G+DPD AA ER LF+IVSASQ +LPG+ED +
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPD-AAVERALFEIVSASQRLLPGSEDGV

Query:  IGNLREMGLSYH
        +G+LRE+GL++H
Subjt:  IGNLREMGLSYH

Q9XGX2 Chalcone synthase 15.0e-3359.83Show/hide
Query:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG
        LRP   ++ ++QQGC A G  LR+AKD+AE N GARVLVV  +I  + F  PSE+HLD +VGQA+F DGAAAV++GADPD  VER LF++VSASQR+LP 
Subjt:  LRP---KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPG

Query:  SEDGVIGNLREMGLSYH
        SE  + G+LRE+GL++H
Subjt:  SEDGVIGNLREMGLSYH

Arabidopsis top hitse value%identityAlignment
AT1G02050.1 Chalcone and stilbene synthase family protein3.4e-1639.09Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI
        ++ ++  GC+     LR+AKD+AE N G+RVL+ + +   + F  P++     LVG A+F DGAAAV+IGADP    E    E+  A Q+ LPG+++ + 
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI

Query:  GNLREMGLSY
        G L E G+++
Subjt:  GNLREMGLSY

AT4G00040.1 Chalcone and stilbene synthase family protein2.2e-1537.27Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI
        ++ ++  GC+   + LR+AKD+AE N G+RVL+ + +   + F  P++     LVG A+F DGAAA++IGADP  + E    E+  A Q+ LP ++  + 
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI

Query:  GNLREMGLSY
        G L E G+++
Subjt:  GNLREMGLSY

AT4G34850.1 Chalcone and stilbene synthase family protein6.1e-1840.91Show/hide
Query:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI
        ++ ++  GC    A LR+AKD+AE N G+RVL+ + +   + F  PS      LVG A+F DGA A++IG+DPD   E+ LFE+ +A Q  LP +E  + 
Subjt:  KIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAVERALFEIVSASQRLLPGSEDGVI

Query:  GNLREMGLSY
        G L E G+++
Subjt:  GNLREMGLSY

AT5G13930.1 Chalcone and stilbene synthase family protein7.5e-3255.93Show/hide
Query:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAV-ERALFEIVSASQRLLP
        LRP ++   ++QQGC A G  LR+AKD+AE N GARVLVV  +I  + F  PS+THLD LVGQA+FSDGAAA+++G+DPD +V E+ +FE+VSA+Q +LP
Subjt:  LRPKIR---VFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGADPDAAV-ERALFEIVSASQRLLP

Query:  GSEDGVIGNLREMGLSYH
         S+  + G+LRE+GL++H
Subjt:  GSEDGVIGNLREMGLSYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCAGCCCATCTCAAGGATTACACATCTCATCGTCTCCACATCCTCAAGCAATTCCATGCCCGGACCCGACCGTACACTCTGCAACCTCCTCGGACTGAGCCCCT
CCGTCCAAAGATTCGTGTGTTCCAACAAGGTTGCCATGCAGCCGGCGCCGCCCTCCGCCTCGCCAAGGACGTCGCAGAGAAAAACGTCGGTGCTCGAGTTCTGGTCGTCT
CCGTCGACATCGCCACCATGTATTTCCACGCCCCATCGGAGACCCACTTGGACATTTTGGTGGGGCAGGCCATATTTTCCGATGGCGCGGCCGCCGTGGTCATCGGCGCC
GACCCAGATGCCGCCGTGGAGCGGGCGTTGTTTGAAATAGTGTCAGCCTCTCAGCGGCTGCTCCCCGGCTCAGAAGATGGAGTGATTGGAAACCTGAGGGAAATGGGACT
CTCGTACCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCAGCCCATCTCAAGGATTACACATCTCATCGTCTCCACATCCTCAAGCAATTCCATGCCCGGACCCGACCGTACACTCTGCAACCTCCTCGGACTGAGCCCCT
CCGTCCAAAGATTCGTGTGTTCCAACAAGGTTGCCATGCAGCCGGCGCCGCCCTCCGCCTCGCCAAGGACGTCGCAGAGAAAAACGTCGGTGCTCGAGTTCTGGTCGTCT
CCGTCGACATCGCCACCATGTATTTCCACGCCCCATCGGAGACCCACTTGGACATTTTGGTGGGGCAGGCCATATTTTCCGATGGCGCGGCCGCCGTGGTCATCGGCGCC
GACCCAGATGCCGCCGTGGAGCGGGCGTTGTTTGAAATAGTGTCAGCCTCTCAGCGGCTGCTCCCCGGCTCAGAAGATGGAGTGATTGGAAACCTGAGGGAAATGGGACT
CTCGTACCATTAG
Protein sequenceShow/hide protein sequence
MGAAHLKDYTSHRLHILKQFHARTRPYTLQPPRTEPLRPKIRVFQQGCHAAGAALRLAKDVAEKNVGARVLVVSVDIATMYFHAPSETHLDILVGQAIFSDGAAAVVIGA
DPDAAVERALFEIVSASQRLLPGSEDGVIGNLREMGLSYH