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MS026872 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026872
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold943_2:821819..822890
RNA-Seq ExpressionMS026872
SyntenyMS026872
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]5.5e-0441.18Show/hide
Query:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFD
        KED T  G+ITK+I  +A    +  F + +R  N+VAH+ AKL+   V   VW+EE P  ++EV+  D
Subjt:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFD
XP_030924586.1 uncharacterized protein LOC115951544 [Quercus lobata]5.5e-0436.23Show/hide
Query:  NKEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFD
        ++EDF+ +G + ++I  +A+ LR+V F++ +R AN VAH+ A+ A N V +  W+E++P    + L +D
Subjt:  NKEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFD
TrEMBL top hitse value%identityAlignment
A0A5B6UQ73 Reverse transcriptase7.8e-0436.84Show/hide
Query:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGN
        +ED + +  + KEI     + R V F +  REAN+VAHA A+          WIEEAP A+  ++N + R+  HG+
Subjt:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGN
A0A5B6V4L7 Reverse transcriptase7.8e-0436.84Show/hide
Query:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGN
        +ED + +  + KEI     + R V F +  REAN+VAHA A+          WIEEAP A+  ++N + R+  HG+
Subjt:  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTTCCTTTGGAGGAGTCTTATTTGGGGGAAAGAGTTGCTTCAGTATGGTGTCTGGTGGAGAGCAGTTCAATAAGGAAGATTTCACAACTGTAGGTATGATTAC
TAAAGAAATCTCAAATATGGCGAAACATCTAAGGAAAGTTGTGTTCACCTGGTGCCGAAGGGAAGCAAATCGAGTTGCCCATGCAGCAGCAAAATTAGCTGTAAACGAGG
TTTTGGAGGGCGTTTGGATAGAAGAAGCTCCCGAAGCCATGAATGAAGTTCTGAATTTTGATTTTAGGGATTTTACCCATGGAAACTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGTTCCTTTGGAGGAGTCTTATTTGGGGGAAAGAGTTGCTTCAGTATGGTGTCTGGTGGAGAGCAGTTCAATAAGGAAGATTTCACAACTGTAGGTATGATTAC
TAAAGAAATCTCAAATATGGCGAAACATCTAAGGAAAGTTGTGTTCACCTGGTGCCGAAGGGAAGCAAATCGAGTTGCCCATGCAGCAGCAAAATTAGCTGTAAACGAGG
TTTTGGAGGGCGTTTGGATAGAAGAAGCTCCCGAAGCCATGAATGAAGTTCTGAATTTTGATTTTAGGGATTTTACCCATGGAAACTACTGA
Protein sequenceShow/hide protein sequence
MPRSFGGVLFGGKSCFSMVSGGEQFNKEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGNY