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MS026880 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026880
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H
Genome locationscaffold16:199652..203266
RNA-Seq ExpressionMS026880
SyntenyMS026880
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]4.3e-1987.72Show/hide
Query:  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWS
        MADLRPSLKADLKVFPEDH  EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WS
Subjt:  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWS
TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H2.1e-1987.72Show/hide
Query:  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWS
        MADLRPSLKADLKVFPEDH  EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WS
Subjt:  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTAT
GAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCTTTCTTCGCCAAGTGGCCTTTCAGCTCATTCTTGACACCTGCTCATCCGA
GTCAGCCGACCTTGACCCTTCAAGTTGGTCATCCCTTTCCAAGGATACGTAAGCTCTTCCCACTGTCATACTTGAAGCAAGTCAAGCTCTTCCCGCGATCATACCTAGAG
CATGTCGAGCTCTTCCGCATGGCCGTCCTTGACCAGATGTTGCTTCTTGGCTTAAAATTGGCAACGTGCAAGGAGTCATTGCTTGGTTGGAGTTGCGTTCCATGTGGCTT
GAACCCAAGACCTCAAGCCACCCAGCCTATCATTTGGGGACAAAAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTAT
GAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCTTTCTTCGCCAAGTGGCCTTTCAGCTCATTCTTGACACCTGCTCATCCGA
GTCAGCCGACCTTGACCCTTCAAGTTGGTCATCCCTTTCCAAGGATACGTAAGCTCTTCCCACTGTCATACTTGAAGCAAGTCAAGCTCTTCCCGCGATCATACCTAGAG
CATGTCGAGCTCTTCCGCATGGCCGTCCTTGACCAGATGTTGCTTCTTGGCTTAAAATTGGCAACGTGCAAGGAGTCATTGCTTGGTTGGAGTTGCGTTCCATGTGGCTT
GAACCCAAGACCTCAAGCCACCCAGCCTATCATTTGGGGACAAAAGAACTAA
Protein sequenceShow/hide protein sequence
MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSFFAKWPFSSFLTPAHPSQPTLTLQVGHPFPRIRKLFPLSYLKQVKLFPRSYLE
HVELFRMAVLDQMLLLGLKLATCKESLLGWSCVPCGLNPRPQATQPIIWGQKN