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MS026905 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026905
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold114:329277..329642
RNA-Seq ExpressionMS026905
SyntenyMS026905
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154947.1 uncharacterized protein LOC111022090 [Momordica charantia]1.1e-3897.56Show/hide
Query:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        +PSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNV GLWNDNQDESDESYDPLGESEEGDYEAE
Subjt:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

XP_022155970.1 uncharacterized protein LOC111022954 [Momordica charantia]6.0e-3490.24Show/hide
Query:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        +PSFPSSSSNPSSSQQPH YY HLGHDIAGLTPLESDVVPCNLGDDRVC WN+ GLWNDNQDESDESYD LG+SEEGDYEAE
Subjt:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]5.0e-1256.92Show/hide
Query:  HPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        H   R +   ++     + +VVPCNLGDDRVCDW+V G+WNDN+DES ESYDPL ES+EG  +AE
Subjt:  HPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

XP_022157017.1 uncharacterized protein LOC111023843 [Momordica charantia]1.8e-1777.59Show/hide
Query:  GHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        GHD+ GLTPL SDVVPCNLGDDRVCDW+V G+WNDN+DES ESYDPL  SEEG  +AE
Subjt:  GHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

TrEMBL top hitse value%identityAlignment
A0A6J1DN26 uncharacterized protein LOC1110220905.1e-3997.56Show/hide
Query:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        +PSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNV GLWNDNQDESDESYDPLGESEEGDYEAE
Subjt:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

A0A6J1DP00 uncharacterized protein LOC1110229542.9e-3490.24Show/hide
Query:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        +PSFPSSSSNPSSSQQPH YY HLGHDIAGLTPLESDVVPCNLGDDRVC WN+ GLWNDNQDESDESYD LG+SEEGDYEAE
Subjt:  MPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

A0A6J1DQB9 Reverse transcriptase2.4e-1256.92Show/hide
Query:  HPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        H   R +   ++     + +VVPCNLGDDRVCDW+V G+WNDN+DES ESYDPL ES+EG  +AE
Subjt:  HPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

A0A6J1DTG5 uncharacterized protein LOC1110238438.5e-1877.59Show/hide
Query:  GHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE
        GHD+ GLTPL SDVVPCNLGDDRVCDW+V G+WNDN+DES ESYDPL  SEEG  +AE
Subjt:  GHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDESYDPLGESEEGDYEAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAGGATGTATCTGAATTGCCTATATACATATCTACTACGCCAAAGCAGGTATATGAGAAT
GAAACGTACATGCCTTCTTTTCCTTCCTCATCATCGAACCCCTCTTCTTCCCAACAACCACACCCCTATTATAGGCATTTAGGTCATGATATAGCGGGTTTAACA
CCATTGGAATCAGATGTTGTTCCATGTAACCTAGGAGATGACAGGGTATGTGATTGGAATGTGTCGGGATTATGGAATGATAATCAAGATGAAAGTGATGAATCA
TATGACCCGTTGGGAGAGTCAGAAGAAGGAGACTATGAAGCAGAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAGGATGTATCTGAATTGCCTATATACATATCTACTACGCCAAAGCAGGTATATGAGAAT
GAAACGTACATGCCTTCTTTTCCTTCCTCATCATCGAACCCCTCTTCTTCCCAACAACCACACCCCTATTATAGGCATTTAGGTCATGATATAGCGGGTTTAACA
CCATTGGAATCAGATGTTGTTCCATGTAACCTAGGAGATGACAGGGTATGTGATTGGAATGTGTCGGGATTATGGAATGATAATCAAGATGAAAGTGATGAATCA
TATGACCCGTTGGGAGAGTCAGAAGAAGGAGACTATGAAGCAGAATTGTGA
Protein sequenceShow/hide protein sequence
MEITDDDDLNFFLTGEDVSELPIYISTTPKQVYENETYMPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVSGLWNDNQDESDES
YDPLGESEEGDYEAEL