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MS026967 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026967
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin protein ligase DRIP2-like
Genome locationscaffold1038:117927..119054
RNA-Seq ExpressionMS026967
SyntenyMS026967
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR044171 - Protein LAX PANICLE 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652308.1 hypothetical protein Csa_022227 [Cucumis sativus]4.6e-2143.29Show/hide
Query:  DWLHLGLGFTAPTKE----EEKEEKYLA------------TPHHLEEVGNLDLRLKIGSPKRKN---------LMHHKDKALPFFHHGYLKNVPLPIPHS
        +WL L LG  +  KE    +EKE++  +            T H   E  NLDLRL+IG   + N         ++ H+ K    FH  Y           
Subjt:  DWLHLGLGFTAPTKE----EEKEEKYLA------------TPHHLEEVGNLDLRLKIGSPKRKN---------LMHHKDKALPFFHHGYLKNVPLPIPHS

Query:  PPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEVTY
          + + ++GLWF+L SSPNR+GG ALPQIPK YIRVKDE MTV MVKKYL+ KLGLSN+AE+ Y
Subjt:  PPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEVTY

KAG6571319.1 Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2148.12Show/hide
Query:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPKR-------KNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP
        M SP     +WL L LG    TK++++E K      +L+E G   +L LRL+IG PK           M  ++     FH   L N     PH   LSSP
Subjt:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPKR-------KNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP

Query:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
             +GLWF+L SSPNR+GG  LPQIPKAYIRVKDE MTV MVKKYL+ KLGLS++AEV
Subjt:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

TYG99320.1 hypothetical protein ES288_A10G186800v1 [Gossypium darwinii]8.1e-1865.82Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   +  +P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

XP_022931988.1 protein LAX PANICLE 2-like [Cucurbita moschata]1.7e-2048.12Show/hide
Query:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPK-------RKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP
        M SP     +WL L LG    TK++++E K      +L E G   +L LRL+IG PK           M  ++     FH   L N     PH   LSSP
Subjt:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPK-------RKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP

Query:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
             +GLWF+L SSPNR+GG  LPQIPKAYIRVKDE MTV MVKKYL+ KLGLS++AEV
Subjt:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

XP_040934862.1 uncharacterized protein LOC107896001 isoform X1 [Gossypium hirsutum]8.1e-1865.82Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   +  +P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

TrEMBL top hitse value%identityAlignment
A0A5D2F0S3 Uncharacterized protein3.9e-1865.82Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   +  +P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

A0A5D2J5P4 Uncharacterized protein1.5e-1767.09Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   + P+P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

A0A5D2XMI8 Uncharacterized protein3.9e-1865.82Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   +  +P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

A0A6J1F0B3 protein LAX PANICLE 2-like8.4e-2148.12Show/hide
Query:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPK-------RKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP
        M SP     +WL L LG    TK++++E K      +L E G   +L LRL+IG PK           M  ++     FH   L N     PH   LSSP
Subjt:  MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVG---NLDLRLKIGSPK-------RKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSP

Query:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
             +GLWF+L SSPNR+GG  LPQIPKAYIRVKDE MTV MVKKYL+ KLGLS++AEV
Subjt:  ----TSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

A0A6P4PK13 uncharacterized protein LOC108478946 isoform X13.9e-1865.82Show/hide
Query:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        G   +  +P+P    H  P + P SGLWF LHS  NR  G ALPQIPKAYIRVKDEN+T+FMVKKYLV KLGLSNEAEV
Subjt:  GYLKNVPLPIP----HSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

SwissProt top hitse value%identityAlignment
G3XKQ9 Protein LAX PANICLE 21.6e-0845.16Show/hide
Query:  PPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        P   +  +G+WF L ++P +     LPQIP++Y+R+KD  +TV ++ KYLV KLGL +E+EV
Subjt:  PPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

Q94AY3 E3 ubiquitin protein ligase DRIP27.9e-0849.06Show/hide
Query:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +WF+L +S N+EG  +LPQIP  Y+R++D N+ V  ++KYL+ KL L +E EV
Subjt:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

Q9LS86 Probable E3 ubiquitin protein ligase DRIPH9.7e-0649.06Show/hide
Query:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +WF+L  S  +     LP I    IRVKD NMTV  +KKYL++KLGL +E +V
Subjt:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

Q9M9Y4 E3 ubiquitin protein ligase DRIP11.4e-0936.84Show/hide
Query:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +PKR      K  A      G  +N+P P   S         +WF+L +S ++EGG +LPQIP  ++R++D N TV  ++KYL+ KL L +E E+
Subjt:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

Arabidopsis top hitse value%identityAlignment
AT1G06770.1 DREB2A-interacting protein 11.0e-1036.84Show/hide
Query:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +PKR      K  A      G  +N+P P   S         +WF+L +S ++EGG +LPQIP  ++R++D N TV  ++KYL+ KL L +E E+
Subjt:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

AT1G06770.2 DREB2A-interacting protein 11.0e-1036.84Show/hide
Query:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +PKR      K  A      G  +N+P P   S         +WF+L +S ++EGG +LPQIP  ++R++D N TV  ++KYL+ KL L +E E+
Subjt:  SPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

AT1G28080.1 RING finger protein1.3e-0847.54Show/hide
Query:  PLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        P   P SGLWF L +S  +E    LPQ+ K+Y+R+KD  +TV ++ KYL+ KL L +E+EV
Subjt:  PLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

AT2G30580.1 DREB2A-interacting protein 25.6e-0949.06Show/hide
Query:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV
        +WF+L +S N+EG  +LPQIP  Y+R++D N+ V  ++KYL+ KL L +E EV
Subjt:  LWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEV

AT5G13250.1 RING finger protein3.9e-1050Show/hide
Query:  PLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAE
        P   P SG+WF L +S N+     LPQIPK+Y+R+KD  MTV ++ KYLV KL L +E++
Subjt:  PLSSPTSGLWFALHSSPNREGGGALPQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCCTTTTGGAGATGACTCAGATTGGCTACACTTGGGATTGGGATTCACAGCCCCAACAAAAGAAGAAGAAAAAGAGGAAAAATATTTGGCAACTCCTCACCA
TTTGGAAGAAGTGGGCAATTTGGATTTAAGGTTAAAAATAGGGTCTCCTAAAAGGAAGAATTTGATGCATCACAAGGACAAAGCTTTGCCATTCTTCCACCATGGCTACC
TCAAAAATGTGCCGCTTCCTATTCCTCACTCTCCTCCCCTTTCATCTCCCACCTCGGGTTTGTGGTTCGCACTCCACTCCTCGCCAAACAGGGAGGGAGGAGGAGCACTG
CCACAGATACCAAAGGCTTACATAAGAGTGAAGGATGAGAACATGACAGTGTTCATGGTGAAGAAGTACTTGGTCATAAAGCTTGGTCTCTCCAATGAAGCTGAGGTAAC
ATACCATACCATAACAAAGCTTTATGATTATACATCACTACAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCCTTTTGGAGATGACTCAGATTGGCTACACTTGGGATTGGGATTCACAGCCCCAACAAAAGAAGAAGAAAAAGAGGAAAAATATTTGGCAACTCCTCACCA
TTTGGAAGAAGTGGGCAATTTGGATTTAAGGTTAAAAATAGGGTCTCCTAAAAGGAAGAATTTGATGCATCACAAGGACAAAGCTTTGCCATTCTTCCACCATGGCTACC
TCAAAAATGTGCCGCTTCCTATTCCTCACTCTCCTCCCCTTTCATCTCCCACCTCGGGTTTGTGGTTCGCACTCCACTCCTCGCCAAACAGGGAGGGAGGAGGAGCACTG
CCACAGATACCAAAGGCTTACATAAGAGTGAAGGATGAGAACATGACAGTGTTCATGGTGAAGAAGTACTTGGTCATAAAGCTTGGTCTCTCCAATGAAGCTGAGGTAAC
ATACCATACCATAACAAAGCTTTATGATTATACATCACTACAAATTTAG
Protein sequenceShow/hide protein sequence
MASPFGDDSDWLHLGLGFTAPTKEEEKEEKYLATPHHLEEVGNLDLRLKIGSPKRKNLMHHKDKALPFFHHGYLKNVPLPIPHSPPLSSPTSGLWFALHSSPNREGGGAL
PQIPKAYIRVKDENMTVFMVKKYLVIKLGLSNEAEVTYHTITKLYDYTSLQI