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MS026969 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026969
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold1038:314265..314988
RNA-Seq ExpressionMS026969
SyntenyMS026969
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]2.6e-1632.16Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y+  Y  I++ YIT+ GAA +  +       N+     ++  +CN   ++++++H
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH

Query:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY
         MY VP  PA   R R          V   D + EV  H  +++PP TQTQ +    +P++M+PT G++ Y
Subjt:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.2e-1631.43Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y++ Y  I++ YIT+ GA  +  +       N+     ++  +CN   ++++++H
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH

Query:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHTHL
         MY VP  PA   R R          V   D + EV  H  E++PP TQTQ +    +P++M+PT G++ Y + +
Subjt:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHTHL

TYK11154.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]4.0e-1735.33Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQINILSSSDEINTLCNVGGRHLQSLHQMYKVP
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y+  Y  IT+ YIT+ GAA   + +N+     +   +CN   ++++++H MY VP
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQINILSSSDEINTLCNVGGRHLQSLHQMYKVP

Query:  -TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPP--FTQTQDDAGPSTPMVMIPTPGSSQY
          PA   R R          V   D + EV  H VE++PP   T TQ D    +P++MIPT G++ Y
Subjt:  -TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPP--FTQTQDDAGPSTPMVMIPTPGSSQY

XP_022149984.1 serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia]8.3e-2384.85Show/hide
Query:  MYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGS
        MY V TPARGPR RG+RQVDQDA + LDDPVPEVIYH VEDIPPFTQTQDDAG STPM MIPTPGS
Subjt:  MYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGS

XP_022152034.1 disease resistance protein RGA2-like [Momordica charantia]7.3e-1956.04Show/hide
Query:  SDEINTLCNVGGRHLQSLHQMYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHT
        S  ++TL    GRHLQ LHQMY+VP P      RG+RQ++QDA    + P PE IYH V+ +PPF +TQ+D GP TPMVMIPTP SS  HT
Subjt:  SDEINTLCNVGGRHLQSLHQMYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHT

TrEMBL top hitse value%identityAlignment
A0A5A7T598 Serine/threonine-protein phosphatase 7 long form-like protein1.3e-1632.16Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y+  Y  I++ YIT+ GAA +  +       N+     ++  +CN   ++++++H
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH

Query:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY
         MY VP  PA   R R          V   D + EV  H  +++PP TQTQ +    +P++M+PT G++ Y
Subjt:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.7e-1731.43Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y++ Y  I++ YIT+ GA  +  +       N+     ++  +CN   ++++++H
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH

Query:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHTHL
         MY VP  PA   R R          V   D + EV  H  E++PP TQTQ +    +P++M+PT G++ Y + +
Subjt:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHTHL

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein1.3e-1632.16Show/hide
Query:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH
        +H+ID+R + W D++AH V RW+ RR F    PP++  D      Y+  Y  I++ YIT+ GAA +  +       N+     ++  +CN   ++++++H
Subjt:  IHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDD-DGACDPGYMSCYTLITRRYITREGAAFAATQI------NILSSSDEINTLCNVGGRHLQSLH

Query:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY
         MY VP  PA   R R          V   D + EV  H  +++PP TQTQ +    +P++M+PT G++ Y
Subjt:  QMYKVP-TPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQY

A0A6J1D8N6 serine/threonine-protein phosphatase 7 long form homolog4.0e-2384.85Show/hide
Query:  MYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGS
        MY V TPARGPR RG+RQVDQDA + LDDPVPEVIYH VEDIPPFTQTQDDAG STPM MIPTPGS
Subjt:  MYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGS

A0A6J1DEU3 disease resistance protein RGA2-like3.5e-1956.04Show/hide
Query:  SDEINTLCNVGGRHLQSLHQMYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHT
        S  ++TL    GRHLQ LHQMY+VP P      RG+RQ++QDA    + P PE IYH V+ +PPF +TQ+D GP TPMVMIPTP SS  HT
Subjt:  SDEINTLCNVGGRHLQSLHQMYKVPTPARGPRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCGACATTCGGGATACATGACATCGACATTCGGAATAGCACCTGGCAGGATCAGATTGCACATTTTGTGGCGAGGTGGAATATACGTAGAGATTTTCTTGTTAT
CAATCCTCCAGTCGACGACGACGGTGCTTGCGATCCAGGATACATGAGCTGTTATACGTTAATCACCAGACGATATATAACTCGAGAAGGAGCAGCATTTGCTGCTACGC
AAATCAATATTCTCTCGTCATCAGACGAAATTAATACGTTGTGCAACGTTGGCGGGAGGCATCTTCAAAGCCTTCATCAAATGTACAAAGTACCTACTCCTGCTCGTGGC
CCTAGGCATAGAGGACAACGTCAAGTAGACCAAGATGCTTCAGTAGGGCTTGACGATCCCGTACCTGAAGTTATCTATCATAAGGTTGAAGACATTCCACCGTTTACACA
GACACAAGATGATGCTGGTCCGTCCACGCCTATGGTCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACATCTTTGCCGCCGCAATATGGCTATGGAGGAGGCCA
TGGACGTGGACGTGGAGAGCATGGACAATACTTCAACCCTACGGAGNCCACCCCCCCCCCCCCTTCTTCTCCCTCCCTCCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATCGACATTCGGGATACATGACATCGACATTCGGAATAGCACCTGGCAGGATCAGATTGCACATTTTGTGGCGAGGTGGAATATACGTAGAGATTTTCTTGTTAT
CAATCCTCCAGTCGACGACGACGGTGCTTGCGATCCAGGATACATGAGCTGTTATACGTTAATCACCAGACGATATATAACTCGAGAAGGAGCAGCATTTGCTGCTACGC
AAATCAATATTCTCTCGTCATCAGACGAAATTAATACGTTGTGCAACGTTGGCGGGAGGCATCTTCAAAGCCTTCATCAAATGTACAAAGTACCTACTCCTGCTCGTGGC
CCTAGGCATAGAGGACAACGTCAAGTAGACCAAGATGCTTCAGTAGGGCTTGACGATCCCGTACCTGAAGTTATCTATCATAAGGTTGAAGACATTCCACCGTTTACACA
GACACAAGATGATGCTGGTCCGTCCACGCCTATGGTCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACATCTTTGCCGCCGCAATATGGCTATGGAGGAGGCCA
TGGACGTGGACGTGGAGAGCATGGACAATACTTCAACCCTACGGAGNCCACCCCCCCCCCCCCTTCTTCTCCCTCCCTCCCTCTGA
Protein sequenceShow/hide protein sequence
MTSTFGIHDIDIRNSTWQDQIAHFVARWNIRRDFLVINPPVDDDGACDPGYMSCYTLITRRYITREGAAFAATQINILSSSDEINTLCNVGGRHLQSLHQMYKVPTPARG
PRHRGQRQVDQDASVGLDDPVPEVIYHKVEDIPPFTQTQDDAGPSTPMVMIPTPGSSQYHTHLCRRNMAMEEAMDVDVESMDNTSTLRXPPPPPLLLPPSL