; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027006 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027006
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1303:91446..100599
RNA-Seq ExpressionMS027006
SyntenyMS027006
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040131.1 hypothetical protein E6C27_scaffold366G001060 [Cucumis melo var. makuwa]2.8e-1435.86Show/hide
Query:  WASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFEKALIILV
        W  L L E E +     D N+LLS + I LC + KV  + + +++AFRS MK++W VH DTRI  AR N+F+IHF+   +K R+ N+G         +L 
Subjt:  WASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFEKALIILV

Query:  SPMAEDWPESM-----VEEVSWADSSSWIGSFIWVCVCLDITRLS
        S   + +   +     V  +++ D S W G F+ V   LD+T+L+
Subjt:  SPMAEDWPESM-----VEEVSWADSSSWIGSFIWVCVCLDITRLS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]6.1e-2232.66Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W       DE   V+I     +L+ + ++LC +AK+ TS +I  +A RS MK++WRVH+ TR E    N++VI F+SL +K+RV++SGPW F 
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDIT---RLSVEVLSSICLMV---LWY
        K+L++L SP A + P  M                                 VEE+    +  W G FI V V +D++   R  +++ +S    +   L Y
Subjt:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDIT---RLSVEVLSSICLMV---LWY

Query:  GVLVSM---SAYLGHSIRECDVPSDASISTSAP--YGDWLRATPLARA
          L         +GHS REC+  S   ++T++P  YGDWLRAT L ++
Subjt:  GVLVSM---SAYLGHSIRECDVPSDASISTSAP--YGDWLRATPLARA

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]2.2e-1933.71Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W +  L +++   + I     L++ E +Q  A+ K+ TS +I ++AFRS MK++W+VH  T IE+A  N++VI F+S+ +KNRV+ SGPW FE
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDITR
         +L++L SP A D P  M                                 VEE+    S  W G FI V V +DI++
Subjt:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDITR

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]5.4e-1832.58Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+D+ + W +  LI++E   + I +   +L+ + IQLCA+ K+  S +I ++AF S MK +W++H+ TRIE+A  N++VI F+++ +K RV + GPW F+
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWP-------------------ESM--------------VEEVSWADSSSWIGSFIWVCVCLDITR
        K+L+ILV   A + P                   E M              VEEV    S  W+  F+WV V +++ +
Subjt:  KALIILVSPMAEDWP-------------------ESM--------------VEEVSWADSSSWIGSFIWVCVCLDITR

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]1.6e-1740Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W +  L  +E     + +   +L+ E IQLC + K+ TS +I   A  S MK +W++H  TRIE+A  N++VI F+++++K RV++SGPW F+
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWP
        K+L +LVSP A D P
Subjt:  KALIILVSPMAEDWP

TrEMBL top hitse value%identityAlignment
A0A5A7TEP2 Uncharacterized protein1.3e-1435.86Show/hide
Query:  WASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFEKALIILV
        W  L L E E +     D N+LLS + I LC + KV  + + +++AFRS MK++W VH DTRI  AR N+F+IHF+   +K R+ N+G         +L 
Subjt:  WASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFEKALIILV

Query:  SPMAEDWPESM-----VEEVSWADSSSWIGSFIWVCVCLDITRLS
        S   + +   +     V  +++ D S W G F+ V   LD+T+L+
Subjt:  SPMAEDWPESM-----VEEVSWADSSSWIGSFIWVCVCLDITRLS

A0A6J1D765 uncharacterized protein LOC1110179023.0e-2232.66Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W       DE   V+I     +L+ + ++LC +AK+ TS +I  +A RS MK++WRVH+ TR E    N++VI F+SL +K+RV++SGPW F 
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDIT---RLSVEVLSSICLMV---LWY
        K+L++L SP A + P  M                                 VEE+    +  W G FI V V +D++   R  +++ +S    +   L Y
Subjt:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDIT---RLSVEVLSSICLMV---LWY

Query:  GVLVSM---SAYLGHSIRECDVPSDASISTSAP--YGDWLRATPLARA
          L         +GHS REC+  S   ++T++P  YGDWLRAT L ++
Subjt:  GVLVSM---SAYLGHSIRECDVPSDASISTSAP--YGDWLRATPLARA

A0A6J1DP89 uncharacterized protein LOC1110229321.1e-1933.71Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W +  L +++   + I     L++ E +Q  A+ K+ TS +I ++AFRS MK++W+VH  T IE+A  N++VI F+S+ +KNRV+ SGPW FE
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDITR
         +L++L SP A D P  M                                 VEE+    S  W G FI V V +DI++
Subjt:  KALIILVSPMAEDWPESM---------------------------------VEEVSWADSSSWIGSFIWVCVCLDITR

A0A6J1DVS4 uncharacterized protein LOC1110235552.6e-1832.58Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+D+ + W +  LI++E   + I +   +L+ + IQLCA+ K+  S +I ++AF S MK +W++H+ TRIE+A  N++VI F+++ +K RV + GPW F+
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWP-------------------ESM--------------VEEVSWADSSSWIGSFIWVCVCLDITR
        K+L+ILV   A + P                   E M              VEEV    S  W+  F+WV V +++ +
Subjt:  KALIILVSPMAEDWP-------------------ESM--------------VEEVSWADSSSWIGSFIWVCVCLDITR

A0A6J1DYG3 uncharacterized protein LOC1110246767.5e-1840Show/hide
Query:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE
        M+++   W +  L  +E     + +   +L+ E IQLC + K+ TS +I   A  S MK +W++H  TRIE+A  N++VI F+++++K RV++SGPW F+
Subjt:  MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFE

Query:  KALIILVSPMAEDWP
        K+L +LVSP A D P
Subjt:  KALIILVSPMAEDWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTTAGTGCGTCGTTGGGCTAGTCTTGTGTTAATCGAGGATGAAGCCATTCCTGTGTCTATTGGGGATGTGAATATTTTGTTGTCGAATGAAACTATTCAATT
GTGTGCCATGGCGAAAGTTTTCACTAGCCATAAGATCCATCTTGATGCCTTTCGATCGTTCATGAAAACTATTTGGCGTGTGCACCATGATACTCGCATTGAATCTGCCC
GTGACAACGTCTTTGTTATTCACTTCCGCTCCCTGATGAAGAAAAATCGGGTTATGAACTCGGGGCCCTGGCATTTTGAAAAAGCGTTAATTATTTTGGTATCCCCAATG
GCAGAGGATTGGCCTGAGTCTATGGTGGAGGAGGTTTCCTGGGCGGATTCTTCCTCTTGGATTGGGTCGTTTATATGGGTATGCGTTTGCTTGGATATCACTCGCCTCTC
CGTCGAGGTGTTAAGCTCTATTTGTCTTATGGTATTGTGGTATGGTGTCCTTGTAAGTATGAGCGCCTACCTCGGCCATTCCATTAGAGAGTGCGACGTACCAAGCGACG
CTTCTATCTCAACGTCGGCTCCTTATGGCGATTGGCTCCGTGCGACTCCATTGGCCCGGGCTCCAATGCGGAGAATGGGGGTCCCAGCGGTCTATCTTCAGGTAATTTTG
GTGCTCGGGGAAGGAGTGGGGATGATCGACGTGAGGCTCCTTTGTTCAGGTCCCTTCCTGCCATCTGAGGCGGAGACGGTGGGTGGTGATGCTTCCTCGGTAGTGGGCGC
CGGCGTGCATGTGACGGCGTCGACTAGTTCTGTTGTCTCTGGCGTGGAACGGGAGCTGGTCGTGCCGTCTTCTGCGGCTACTGATGCCACGATTATGTTGACTGCGCACG
ACACGCATACACGATCTGATGGTTTAGTTTTGACTCCACCTATGCTTTTGGAGCTTGGGGATTCCTCTCAACCCAAGGCCTCTTCTATTGGTCCTATTCTGTCAAATGAG
TCGGCCTCAACTAAACACTGGAAACAACTTGCACGTGGAGCTATTATGGATATCCCATTTCAGGTGGGGCCACTGGTCTTAGTGAGAAACGTGACTTCCCATTTGAGATC
TCCTCCTCCCAGATTCTTGGGAAAAAACAAAAACTTTGATGATGCTATAGCATCGATTCCAGAAAAAGACAAAAAGCGGCAAGCTAGCAATGAAAGGACTTCTCAACAGT
GTTTACTACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATTTAGTGCGTCGTTGGGCTAGTCTTGTGTTAATCGAGGATGAAGCCATTCCTGTGTCTATTGGGGATGTGAATATTTTGTTGTCGAATGAAACTATTCAATT
GTGTGCCATGGCGAAAGTTTTCACTAGCCATAAGATCCATCTTGATGCCTTTCGATCGTTCATGAAAACTATTTGGCGTGTGCACCATGATACTCGCATTGAATCTGCCC
GTGACAACGTCTTTGTTATTCACTTCCGCTCCCTGATGAAGAAAAATCGGGTTATGAACTCGGGGCCCTGGCATTTTGAAAAAGCGTTAATTATTTTGGTATCCCCAATG
GCAGAGGATTGGCCTGAGTCTATGGTGGAGGAGGTTTCCTGGGCGGATTCTTCCTCTTGGATTGGGTCGTTTATATGGGTATGCGTTTGCTTGGATATCACTCGCCTCTC
CGTCGAGGTGTTAAGCTCTATTTGTCTTATGGTATTGTGGTATGGTGTCCTTGTAAGTATGAGCGCCTACCTCGGCCATTCCATTAGAGAGTGCGACGTACCAAGCGACG
CTTCTATCTCAACGTCGGCTCCTTATGGCGATTGGCTCCGTGCGACTCCATTGGCCCGGGCTCCAATGCGGAGAATGGGGGTCCCAGCGGTCTATCTTCAGGTAATTTTG
GTGCTCGGGGAAGGAGTGGGGATGATCGACGTGAGGCTCCTTTGTTCAGGTCCCTTCCTGCCATCTGAGGCGGAGACGGTGGGTGGTGATGCTTCCTCGGTAGTGGGCGC
CGGCGTGCATGTGACGGCGTCGACTAGTTCTGTTGTCTCTGGCGTGGAACGGGAGCTGGTCGTGCCGTCTTCTGCGGCTACTGATGCCACGATTATGTTGACTGCGCACG
ACACGCATACACGATCTGATGGTTTAGTTTTGACTCCACCTATGCTTTTGGAGCTTGGGGATTCCTCTCAACCCAAGGCCTCTTCTATTGGTCCTATTCTGTCAAATGAG
TCGGCCTCAACTAAACACTGGAAACAACTTGCACGTGGAGCTATTATGGATATCCCATTTCAGGTGGGGCCACTGGTCTTAGTGAGAAACGTGACTTCCCATTTGAGATC
TCCTCCTCCCAGATTCTTGGGAAAAAACAAAAACTTTGATGATGCTATAGCATCGATTCCAGAAAAAGACAAAAAGCGGCAAGCTAGCAATGAAAGGACTTCTCAACAGT
GTTTACTACAGTAA
Protein sequenceShow/hide protein sequence
MEDLVRRWASLVLIEDEAIPVSIGDVNILLSNETIQLCAMAKVFTSHKIHLDAFRSFMKTIWRVHHDTRIESARDNVFVIHFRSLMKKNRVMNSGPWHFEKALIILVSPM
AEDWPESMVEEVSWADSSSWIGSFIWVCVCLDITRLSVEVLSSICLMVLWYGVLVSMSAYLGHSIRECDVPSDASISTSAPYGDWLRATPLARAPMRRMGVPAVYLQVIL
VLGEGVGMIDVRLLCSGPFLPSEAETVGGDASSVVGAGVHVTASTSSVVSGVERELVVPSSAATDATIMLTAHDTHTRSDGLVLTPPMLLELGDSSQPKASSIGPILSNE
SASTKHWKQLARGAIMDIPFQVGPLVLVRNVTSHLRSPPPRFLGKNKNFDDAIASIPEKDKKRQASNERTSQQCLLQ