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MS027026 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027026
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold429:16678..17152
RNA-Seq ExpressionMS027026
SyntenyMS027026
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141766.1 uncharacterized protein LOC111012047 [Momordica charantia]7.2e-0528.79Show/hide
Query:  ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEINTD-------------------------------------------DAC---NNRRSSVGVLLRDE
        ENL+  E+ LA I CWA WND+N + N   V +++T+                                           DA     N+R  VGVL+RD+
Subjt:  ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEINTD-------------------------------------------DAC---NNRRSSVGVLLRDE

Query:  KSGIIAAMVGIYPGRCPQVEEITTIRDGLRLA
        ++ I+AA++  +    P + EI  IR+ +RLA
Subjt:  KSGIIAAMVGIYPGRCPQVEEITTIRDGLRLA

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]1.1e-1641.98Show/hide
Query:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ-----------------------VLEINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI
        M+NLS   + LA ITCWA+WND N  +NKK+                       V+++NTD A +   S VGVLLRD  + I+AAM+  +  + P + EI
Subjt:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ-----------------------VLEINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI

Query:  TTIRDGLRLALQLELPRMMVESDSLGVIQLL
          IR+GLRLA +L + R+MVESDSL  + L+
Subjt:  TTIRDGLRLALQLELPRMMVESDSLGVIQLL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.5e-0528.21Show/hide
Query:  ENLSNVEIALASITCWAIWNDKNLKLNKKQV-----------------------------------------------LEINTDDACNNRRSSVGVLLRD
        E L   ++ LA+IT W IWND+N  ++ KQV                                               L++NTD AC    +S G ++RD
Subjt:  ENLSNVEIALASITCWAIWNDKNLKLNKKQV-----------------------------------------------LEINTDDACNNRRSSVGVLLRD

Query:  EKSGIIAA-MVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLLR
            ++AA  + +     P + EI  I +GL+ A       + VESDSL  IQL+R
Subjt:  EKSGIIAA-MVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLLR

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]6.1e-1232.67Show/hide
Query:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ------------------------------------------VLEINTDDACNNRRSSVGVLLRDEKSG
        M+NLS  E+ L  ITCWA+WND++  +NKK+                                          V+++NTD A +   S VGVLLR+  + 
Subjt:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ------------------------------------------VLEINTDDACNNRRSSVGVLLRDEKSG

Query:  IIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLL
        I+ AMV  +  + P + +I  IR+GL LA +L + R++VE+DSL  + L+
Subjt:  IIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLL

XP_030939988.1 uncharacterized protein LOC115964900 [Quercus lobata]1.4e-0541.57Show/hide
Query:  QVLEINTDDACNN--RRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI--TTIRDGLRLALQLELPRMMVESDSLGVIQ--LLRKLSG
        +V +INTD A  N  R SS+GV++RD +   +AA+  + PG C  ++EI   T++ G+ LA +L+L +++VESDSL ++Q  L +  SG
Subjt:  QVLEINTDDACNN--RRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI--TTIRDGLRLALQLELPRMMVESDSLGVIQ--LLRKLSG

TrEMBL top hitse value%identityAlignment
A0A1R3KHF4 RNase H domain-containing protein1.7e-0435.14Show/hide
Query:  EINTDDACNNR--RSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVI
        ++N D A N +   + +GV++RD +  +I  M GI   R   + E    ++GLR+A QL++P++++ESDSL ++
Subjt:  EINTDDACNNR--RSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVI

A0A6J1CK80 uncharacterized protein LOC1110120473.5e-0528.79Show/hide
Query:  ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEINTD-------------------------------------------DAC---NNRRSSVGVLLRDE
        ENL+  E+ LA I CWA WND+N + N   V +++T+                                           DA     N+R  VGVL+RD+
Subjt:  ENLSNVEIALASITCWAIWNDKNLKLNKKQVLEINTD-------------------------------------------DAC---NNRRSSVGVLLRDE

Query:  KSGIIAAMVGIYPGRCPQVEEITTIRDGLRLA
        ++ I+AA++  +    P + EI  IR+ +RLA
Subjt:  KSGIIAAMVGIYPGRCPQVEEITTIRDGLRLA

A0A6J1DPU1 uncharacterized protein LOC1110224265.2e-1741.98Show/hide
Query:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ-----------------------VLEINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI
        M+NLS   + LA ITCWA+WND N  +NKK+                       V+++NTD A +   S VGVLLRD  + I+AAM+  +  + P + EI
Subjt:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ-----------------------VLEINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEI

Query:  TTIRDGLRLALQLELPRMMVESDSLGVIQLL
          IR+GLRLA +L + R+MVESDSL  + L+
Subjt:  TTIRDGLRLALQLELPRMMVESDSLGVIQLL

A0A6J1DX30 uncharacterized protein LOC1110248742.7e-0528.21Show/hide
Query:  ENLSNVEIALASITCWAIWNDKNLKLNKKQV-----------------------------------------------LEINTDDACNNRRSSVGVLLRD
        E L   ++ LA+IT W IWND+N  ++ KQV                                               L++NTD AC    +S G ++RD
Subjt:  ENLSNVEIALASITCWAIWNDKNLKLNKKQV-----------------------------------------------LEINTDDACNNRRSSVGVLLRD

Query:  EKSGIIAA-MVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLLR
            ++AA  + +     P + EI  I +GL+ A       + VESDSL  IQL+R
Subjt:  EKSGIIAA-MVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLLR

A0A6J1DZK3 uncharacterized protein LOC1110249682.9e-1232.67Show/hide
Query:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ------------------------------------------VLEINTDDACNNRRSSVGVLLRDEKSG
        M+NLS  E+ L  ITCWA+WND++  +NKK+                                          V+++NTD A +   S VGVLLR+  + 
Subjt:  MENLSNVEIALASITCWAIWNDKNLKLNKKQ------------------------------------------VLEINTDDACNNRRSSVGVLLRDEKSG

Query:  IIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLL
        I+ AMV  +  + P + +I  IR+GL LA +L + R++VE+DSL  + L+
Subjt:  IIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATCTTTCGAACGTTGAAATCGCCCTAGCAAGCATTACCTGTTGGGCTATCTGGAATGACAAGAATTTGAAGTTAAACAAAAAGCAAGTTCTTGAGATTAATAC
AGATGACGCCTGCAATAATCGTAGATCTAGTGTAGGGGTTCTGCTTAGGGATGAGAAGTCAGGTATTATAGCAGCTATGGTGGGTATTTATCCAGGGCGTTGTCCTCAAG
TAGAGGAAATTACAACGATCCGAGATGGCTTGAGGCTTGCTCTACAACTAGAGCTTCCTCGGATGATGGTGGAGTCGGATTCTTTGGGAGTTATTCAATTATTGAGGAAG
CTGAGCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATCTTTCGAACGTTGAAATCGCCCTAGCAAGCATTACCTGTTGGGCTATCTGGAATGACAAGAATTTGAAGTTAAACAAAAAGCAAGTTCTTGAGATTAATAC
AGATGACGCCTGCAATAATCGTAGATCTAGTGTAGGGGTTCTGCTTAGGGATGAGAAGTCAGGTATTATAGCAGCTATGGTGGGTATTTATCCAGGGCGTTGTCCTCAAG
TAGAGGAAATTACAACGATCCGAGATGGCTTGAGGCTTGCTCTACAACTAGAGCTTCCTCGGATGATGGTGGAGTCGGATTCTTTGGGAGTTATTCAATTATTGAGGAAG
CTGAGCGGCTAG
Protein sequenceShow/hide protein sequence
MENLSNVEIALASITCWAIWNDKNLKLNKKQVLEINTDDACNNRRSSVGVLLRDEKSGIIAAMVGIYPGRCPQVEEITTIRDGLRLALQLELPRMMVESDSLGVIQLLRK
LSG