CuGenDBv2

Gene ID	MS027035
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gag/pol protein
Genome location	scaffold657:148607..148876
RNA-Seq Expression	MS027035
Synteny	MS027035
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]

9.3e-16

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SGSK +KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

1.9e-16

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KKNKGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

KAA0058447.1 gag/pol protein [Cucumis melo var. makuwa]

1.2e-15

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FHKGSTS TKS PS SG+K  KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

TYJ96910.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-16

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KKNKGGQ+NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-15

62.79

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMN4 Gag/pol protein

4.5e-16

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SGSK +KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass

9.1e-17

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KKNKGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

A0A5A7UUN7 Gag/pol protein

5.9e-16

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FHKGSTS TKS PS SG+K  KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

A0A5D3BAN6 Gag/pol protein

6.9e-17

63.95

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KKNKGGQ+NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

A0A5D3CPJ6 Gag/pol protein

7.7e-16

62.79

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Query:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA
        ++NK+ Y LTTLLNEL+T+ESLMK KG KG ANVATS + FH+GSTS TKS PS SG+K +KK KGGQ NK    A    K  KAA
Subjt:  MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGAATAAACTGGAATACAACCTGACCACGCTCCTCAACGAGCTCAAGACTTATGAGTCCCTCATGAAAAACAAGGGACTTAAGGGAGTGGCAAATGTTGCCACCTC
CAACAAAAACTTCCACAAAGGTTCGACCTCTTGGACTAAGTCTGGACCTTCCTGTTCGGGTTCGAAGAACTTCAAAAAGAATAAGGGTGGACAGAGGAATAAAACTGTCC
CCACTGCTGTCCATAAGAGGAAAAATGATAAGGCTGCAGCCAAAGGGTAA

mRNA sequence

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Protein sequence

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MLNKLEYNLTTLLNELKTYESLMKNKGLKGVANVATSNKNFHKGSTSWTKSGPSCSGSKNFKKNKGGQRNKTVPTAVHKRKNDKAAAKG

MS027035 (gene) of Bitter gourd (TR) v1 genome