; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027131 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027131
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold9_1:646587..647456
RNA-Seq ExpressionMS027131
SyntenyMS027131
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652120.1 hypothetical protein Csa_022249 [Cucumis sativus]2.4e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R +ANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S++V ARQL +E P+PDA+A+        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R+IF   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

KAG7029417.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-2855.04Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL+++C+ S+LV ARQL DE PSPDA+A+        T   T Y  +
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G +   R+IF   P  ++D V +NA++ G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

XP_004152765.1 pentatricopeptide repeat-containing protein At1g25360 [Cucumis sativus]2.4e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R +ANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S++V ARQL +E P+PDA+A+        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R+IF   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

XP_008444772.1 PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis melo]4.0e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R VANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S+LV ARQL DE P+P A+ +        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R++F   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

XP_022144374.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]2.5e-3059.69Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MR+ALEVR +AN YAAQL LCSPLNPASYSLA+T HAHMIASGFKPRG FLNRLLQ++C+ S+LV ARQL DE PSPDA+A         T     Y  +
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G +  AR+IF   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

TrEMBL top hitse value%identityAlignment
A0A0A0LPE4 DYW_deaminase domain-containing protein1.1e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R +ANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S++V ARQL +E P+PDA+A+        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R+IF   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

A0A1S3BBZ8 pentatricopeptide repeat-containing protein At1g25360-like1.9e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R VANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S+LV ARQL DE P+P A+ +        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R++F   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

A0A5A7VDP5 Pentatricopeptide repeat-containing protein1.9e-2853.49Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R VANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL+M+C+ S+LV ARQL DE P+P A+ +        T   T YC  
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G ++  R++F   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

A0A6J1CT83 pentatricopeptide repeat-containing protein At1g25360-like1.2e-3059.69Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MR+ALEVR +AN YAAQL LCSPLNPASYSLA+T HAHMIASGFKPRG FLNRLLQ++C+ S+LV ARQL DE PSPDA+A         T     Y  +
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G +  AR+IF   P  ++D V +NA+++G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

A0A6J1KEC4 pentatricopeptide repeat-containing protein At1g25360-like isoform X23.3e-2854.26Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL+++C+ S++V ARQL DE PSPDA+A+        T   T Y  +
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKN

Query:  GKVDGARKIFYEMP--VKDIVTWNAILSG
        G +   R+IF   P  ++D V +NA++ G
Subjt:  GKVDGARKIFYEMP--VKDIVTWNAILSG

SwissProt top hitse value%identityAlignment
O23169 Pentatricopeptide repeat-containing protein At4g371707.4e-0932.48Show/hide
Query:  ANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIF
        A+ Y   + +CS     +    +  H H+  SGF P     NRLL+M+ +  SLV+AR++ DE P+ D        L  +      Y + G ++ ARK+F
Subjt:  ANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIF

Query:  YEMPVKDIVTWNAILSG
         EM  KD  +W A+++G
Subjt:  YEMPVKDIVTWNAILSG

Q9FRI5 Pentatricopeptide repeat-containing protein At1g253609.3e-2034.2Show/hide
Query:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGA
        VR +ANRYAA L LC PL   S  LA+  H ++I  GF+PR   LNRL+ ++C+ S L  ARQL DE   PD +A+        T   + YC +G +  A
Subjt:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGA

Query:  RKIFYEMPV--KDIVTWNAILSG--------SHYSLFC------------------------AWSIGECRQLHAQLVHLGHSSTLSDGNAMIS
        R +F + PV  +D V +NA+++G        S  +LFC                        A    +C Q HA  +  G     S  NA++S
Subjt:  RKIFYEMPV--KDIVTWNAILSG--------SHYSLFC------------------------AWSIGECRQLHAQLVHLGHSSTLSDGNAMIS

Q9FWA6 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial3.9e-1036.08Show/hide
Query:  LAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG
        L + AHAHMI SGF+P    LN LLQ++      V+A  + D+ P  D ++ +             Y K+  +  A   F  MPV+D+V+WN++LSG
Subjt:  LAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic3.7e-0828.45Show/hide
Query:  NRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFY
        N Y    +L S     ++   Q  H H++  G          L+ M+ +   L +A ++ D+SP  D ++        +T     Y   G ++ A+K+F 
Subjt:  NRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFY

Query:  EMPVKDIVTWNAILSG
        E+PVKD+V+WNA++SG
Subjt:  EMPVKDIVTWNAILSG

Q9LP03 Pentatricopeptide repeat-containing protein At1g43980, mitochondrial7.4e-0932Show/hide
Query:  SYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG
        S +LA+  HA ++ +GF     + NR LQ++ +  S++NA QL D+ P  + +         +        KNG ++ A  +F EMP +D+V+WN ++SG
Subjt:  SYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.6e-0928.45Show/hide
Query:  NRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFY
        N Y    +L S     ++   Q  H H++  G          L+ M+ +   L +A ++ D+SP  D ++        +T     Y   G ++ A+K+F 
Subjt:  NRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFY

Query:  EMPVKDIVTWNAILSG
        E+PVKD+V+WNA++SG
Subjt:  EMPVKDIVTWNAILSG

AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein6.6e-2134.2Show/hide
Query:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGA
        VR +ANRYAA L LC PL   S  LA+  H ++I  GF+PR   LNRL+ ++C+ S L  ARQL DE   PD +A+        T   + YC +G +  A
Subjt:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGA

Query:  RKIFYEMPV--KDIVTWNAILSG--------SHYSLFC------------------------AWSIGECRQLHAQLVHLGHSSTLSDGNAMIS
        R +F + PV  +D V +NA+++G        S  +LFC                        A    +C Q HA  +  G     S  NA++S
Subjt:  RKIFYEMPV--KDIVTWNAILSG--------SHYSLFC------------------------AWSIGECRQLHAQLVHLGHSSTLSDGNAMIS

AT1G43980.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.3e-1032Show/hide
Query:  SYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG
        S +LA+  HA ++ +GF     + NR LQ++ +  S++NA QL D+ P  + +         +        KNG ++ A  +F EMP +D+V+WN ++SG
Subjt:  SYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG

AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-1136.08Show/hide
Query:  LAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG
        L + AHAHMI SGF+P    LN LLQ++      V+A  + D+ P  D ++ +             Y K+  +  A   F  MPV+D+V+WN++LSG
Subjt:  LAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSG

AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein5.3e-1032.48Show/hide
Query:  ANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIF
        A+ Y   + +CS     +    +  H H+  SGF P     NRLL+M+ +  SLV+AR++ DE P+ D        L  +      Y + G ++ ARK+F
Subjt:  ANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIF

Query:  YEMPVKDIVTWNAILSG
         EM  KD  +W A+++G
Subjt:  YEMPVKDIVTWNAILSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATGCCTTGGAAGTCCGCACGGTGGCAAACCGGTACGCCGCACAGTTGCTACTCTGTTCCCCACTGAATCCGGCTTCCTATTCGCTTGCTCAGACTGCCCATGC
CCACATGATTGCTTCCGGATTTAAACCTCGTGGGGATTTCCTCAATCGCCTCCTCCAAATGTTCTGCAGATTGTCGAGTCTTGTTAATGCGCGCCAACTGTTGGACGAAA
GTCCCAGCCCAGATGCTATGGCAAAAAGCAATTTTCGGCTTGATGACTTTACATTTACATTTACTTTGTACTGCAAGAATGGTAAAGTTGATGGGGCACGGAAGATTTTT
TATGAGATGCCAGTTAAAGATATCGTTACTTGGAATGCAATCTTATCAGGGAGCCATTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATGTCGCCAGCTCCATGCTCA
GCTTGTTCATCTTGGCCACAGTTCAACACTCTCAGATGGCAATGCAATGATCTCAGATTCTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATGCCTTGGAAGTCCGCACGGTGGCAAACCGGTACGCCGCACAGTTGCTACTCTGTTCCCCACTGAATCCGGCTTCCTATTCGCTTGCTCAGACTGCCCATGC
CCACATGATTGCTTCCGGATTTAAACCTCGTGGGGATTTCCTCAATCGCCTCCTCCAAATGTTCTGCAGATTGTCGAGTCTTGTTAATGCGCGCCAACTGTTGGACGAAA
GTCCCAGCCCAGATGCTATGGCAAAAAGCAATTTTCGGCTTGATGACTTTACATTTACATTTACTTTGTACTGCAAGAATGGTAAAGTTGATGGGGCACGGAAGATTTTT
TATGAGATGCCAGTTAAAGATATCGTTACTTGGAATGCAATCTTATCAGGGAGCCATTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATGTCGCCAGCTCCATGCTCA
GCTTGTTCATCTTGGCCACAGTTCAACACTCTCAGATGGCAATGCAATGATCTCAGATTCTCAATGA
Protein sequenceShow/hide protein sequence
MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLLQMFCRLSSLVNARQLLDESPSPDAMAKSNFRLDDFTFTFTLYCKNGKVDGARKIF
YEMPVKDIVTWNAILSGSHYSLFCAWSIGECRQLHAQLVHLGHSSTLSDGNAMISDSQ