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MS027157 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027157
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSingle-stranded nucleic acid binding R3H protein
Genome locationscaffold197:571833..572109
RNA-Seq ExpressionMS027157
SyntenyMS027157
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154556.1 R3H domain-containing protein 1-like isoform X1 [Momordica charantia]1.2e-07100Show/hide
Query:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
        MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
Subjt:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
XP_022154558.1 uncharacterized protein LOC111021798 isoform X2 [Momordica charantia]9.6e-0896.77Show/hide
Query:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLTS
        MDSSDWLKDKVSMVDPFLVEALQNPRHRLT+
Subjt:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLTS
TrEMBL top hitse value%identityAlignment
A0A6J1DKM4 uncharacterized protein LOC111021798 isoform X24.6e-0896.77Show/hide
Query:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLTS
        MDSSDWLKDKVSMVDPFLVEALQNPRHRLT+
Subjt:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLTS
A0A6J1DP27 R3H domain-containing protein 1-like isoform X16.0e-08100Show/hide
Query:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
        MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
Subjt:  MDSSDWLKDKVSMVDPFLVEALQNPRHRLT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G40960.1 Single-stranded nucleic acid binding R3H protein1.4e-0460Show/hide
Query:  LKDKVSMVDPFLVEALQNPRHRLT-----SSVLRFLSALD
        + DK   VDPFLVEALQNPRHRLT       V RFL + D
Subjt:  LKDKVSMVDPFLVEALQNPRHRLT-----SSVLRFLSALD
AT3G10770.1 Single-stranded nucleic acid binding R3H protein4.7e-0579.17Show/hide
Query:  LKDKVSMVDPFLVEALQNPRHRLT
        + +K +MVDPFLVEALQNPRHRLT
Subjt:  LKDKVSMVDPFLVEALQNPRHRLT
AT3G10770.2 Single-stranded nucleic acid binding R3H protein4.7e-0579.17Show/hide
Query:  LKDKVSMVDPFLVEALQNPRHRLT
        + +K +MVDPFLVEALQNPRHRLT
Subjt:  LKDKVSMVDPFLVEALQNPRHRLT
AT5G05100.1 Single-stranded nucleic acid binding R3H protein1.2e-0583.33Show/hide
Query:  LKDKVSMVDPFLVEALQNPRHRLT
        + DK +MVDPFLVEALQNPRHRLT
Subjt:  LKDKVSMVDPFLVEALQNPRHRLT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCTCCGATTGGCTCAAAGACAAAGTTTCAATGGTTGACCCTTTCTTGGTCGAGGCCCTTCAGAATCCTCGGCACCGTCTCACCAGTTCGGTTTTGAGATTCTT
GTCTGCTCTGGATTGCCCTGTTTCTGTTAAGTATGGCATGTTTGGTTTTGAGCTTTTGGGGTTCTTTAGATTTTTAGAAAATCTGCCATTGTTCTTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTCCTCCGATTGGCTCAAAGACAAAGTTTCAATGGTTGACCCTTTCTTGGTCGAGGCCCTTCAGAATCCTCGGCACCGTCTCACCAGTTCGGTTTTGAGATTCTT
GTCTGCTCTGGATTGCCCTGTTTCTGTTAAGTATGGCATGTTTGGTTTTGAGCTTTTGGGGTTCTTTAGATTTTTAGAAAATCTGCCATTGTTCTTCTTCTGA
Protein sequenceShow/hide protein sequence
MDSSDWLKDKVSMVDPFLVEALQNPRHRLTSSVLRFLSALDCPVSVKYGMFGFELLGFFRFLENLPLFFF