; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027227 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027227
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold322:485961..490309
RNA-Seq ExpressionMS027227
SyntenyMS027227
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV61033.1 hypothetical protein CFOL_v3_04561 [Cephalotus follicularis]1.7e-0736.36Show/hide
Query:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRG-PTGGESTTSERPWLDKP
        ++  E+  + +LDHGHDT +CR LKNQ+E L+++G+L+++V      G  RR+    +A P+    ++ E    I TIS G  +GG+    E+P  D P
Subjt:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRG-PTGGESTTSERPWLDKP

GAV65494.1 hypothetical protein CFOL_v3_09009 [Cephalotus follicularis]1.2e-0535.79Show/hide
Query:  EQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRGPTGGEST-TSERPWLDKP
        E+  + + DHGHDT +CR LKNQ+E L+++G+L+++V      G  RR+    +A  +    ++ +    I TIS G   G +T   ERP  D P
Subjt:  EQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRGPTGGEST-TSERPWLDKP

OMO62054.1 Retrotransposon gag protein [Corchorus capsularis]1.2e-0556.82Show/hide
Query:  DHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNN
        DHGHDT DCRDLKN++E+LV+RG+L+ FV    + G  RR F +
Subjt:  DHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNN

XP_011070173.1 uncharacterized protein LOC105155887 [Sesamum indicum]3.9e-0732.84Show/hide
Query:  VIVAATRKTRDNRQPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKK---DE
        ++V   R+   N+ P    K  ++  ++   ++  + + D GH T +C  LKN++E L++RGYLKE+V  G+            K QP+ ++SK+   D+
Subjt:  VIVAATRKTRDNRQPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKK---DE

Query:  HLPT---ILTISRGPTGGESTTSERPWLDKPEGS
        +LPT   I+ IS GP GG+ST + R       GS
Subjt:  HLPT---ILTISRGPTGGESTTSERPWLDKPEGS

XP_012835110.1 PREDICTED: uncharacterized protein LOC105955856 [Erythranthe guttata]9.5e-0631.93Show/hide
Query:  QPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRR-KFNNIKAQPKPTSSKKDEHLPT---ILTISRGP
        QP    K + +R++    E+  + + D GH T +C  LK ++E L+K+G+L EFV          + +F +   +P P   ++D++LPT   I  IS GP
Subjt:  QPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRR-KFNNIKAQPKPTSSKKDEHLPT---ILTISRGP

Query:  TGGESTTSERPWLDKPEGS
        +GG++ +S R  +    GS
Subjt:  TGGESTTSERPWLDKPEGS

TrEMBL top hitse value%identityAlignment
A0A1Q3AZQ6 Uncharacterized protein8.4e-0836.36Show/hide
Query:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRG-PTGGESTTSERPWLDKP
        ++  E+  + +LDHGHDT +CR LKNQ+E L+++G+L+++V      G  RR+    +A P+    ++ E    I TIS G  +GG+    E+P  D P
Subjt:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRG-PTGGESTTSERPWLDKP

A0A1Q3BCD9 Uncharacterized protein6.0e-0635.79Show/hide
Query:  EQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRGPTGGEST-TSERPWLDKP
        E+  + + DHGHDT +CR LKNQ+E L+++G+L+++V      G  RR+    +A  +    ++ +    I TIS G   G +T   ERP  D P
Subjt:  EQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRGPTGGEST-TSERPWLDKP

A0A1R3GVC8 Retrotransposon gag protein6.0e-0656.82Show/hide
Query:  DHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNN
        DHGHDT DCRDLKN++E+LV+RG+L+ FV    + G  RR F +
Subjt:  DHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNN

A0A6I9SKG8 uncharacterized protein LOC1051558871.9e-0732.84Show/hide
Query:  VIVAATRKTRDNRQPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKK---DE
        ++V   R+   N+ P    K  ++  ++   ++  + + D GH T +C  LKN++E L++RGYLKE+V  G+            K QP+ ++SK+   D+
Subjt:  VIVAATRKTRDNRQPTAAAKTHQERRRQKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKK---DE

Query:  HLPT---ILTISRGPTGGESTTSERPWLDKPEGS
        +LPT   I+ IS GP GG+ST + R       GS
Subjt:  HLPT---ILTISRGPTGGESTTSERPWLDKPEGS

A0A6J1DWF4 uncharacterized protein LOC1110241207.8e-0637.5Show/hide
Query:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCH---RRKFNNIKA--QPKPTSSKKDE----HLPTILTISRGPTGGES
        ++ + +  + + DHGHDT+ C DL+++VE+L++RG+LK++VG+  K  C    +RKF+ +    + K  S KK E     L  + TI  GP GG S
Subjt:  QKGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCH---RRKFNNIKA--QPKPTSSKKDE----HLPTILTISRGPTGGES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGAACCACATCTGTATTCGGGGGATTGTTTGTAATTGTTCAAACTGATTCAAGTCCAATTGAAAGTGATATGCTGGTTGAGCTTTCGACGGCCATGGAAGAAAG
GAAGAAGAAAAGAATTAGGGTAGTAGTTAAATGCTTTTGTTACTTTATAGAGAAGGGATGTGGCGGCGGTGGTGGAGACGAAGGAGGTGGGTGGCAGCAATGGCGGCAGA
GGTGGTTGACAGGGGCAGAGTTGAATGTGATAGTGGCGGCAACGAGGAAGACGAGAGATAATCGACAACCTACTGCAGCGGCCAAAACGCACCAGGAGCGACGCCGCCAA
AAGGGACAAGAGCAAGTATTGCAAGTTTACCTGGACCACGGGCATGACACTGCTGACTGTAGAGACCTCAAGAATCAAGTCGAATCCTTGGTCAAAAGGGGATACCTAAA
AGAGTTCGTGGGAGAGGGCACGAAACCAGGATGCCATAGGCGAAAATTCAATAACATCAAGGCACAGCCAAAGCCAACATCCTCGAAGAAGGACGAACACCTGCCGACCA
TCCTCACTATCAGCAGAGGCCCGACAGGAGGGGAATCAACAACAAGCGAAAGGCCCTGGCTAGACAAGCCCGAGGGAAGCCGGGAACGCCGAAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGAACCACATCTGTATTCGGGGGATTGTTTGTAATTGTTCAAACTGATTCAAGTCCAATTGAAAGTGATATGCTGGTTGAGCTTTCGACGGCCATGGAAGAAAG
GAAGAAGAAAAGAATTAGGGTAGTAGTTAAATGCTTTTGTTACTTTATAGAGAAGGGATGTGGCGGCGGTGGTGGAGACGAAGGAGGTGGGTGGCAGCAATGGCGGCAGA
GGTGGTTGACAGGGGCAGAGTTGAATGTGATAGTGGCGGCAACGAGGAAGACGAGAGATAATCGACAACCTACTGCAGCGGCCAAAACGCACCAGGAGCGACGCCGCCAA
AAGGGACAAGAGCAAGTATTGCAAGTTTACCTGGACCACGGGCATGACACTGCTGACTGTAGAGACCTCAAGAATCAAGTCGAATCCTTGGTCAAAAGGGGATACCTAAA
AGAGTTCGTGGGAGAGGGCACGAAACCAGGATGCCATAGGCGAAAATTCAATAACATCAAGGCACAGCCAAAGCCAACATCCTCGAAGAAGGACGAACACCTGCCGACCA
TCCTCACTATCAGCAGAGGCCCGACAGGAGGGGAATCAACAACAAGCGAAAGGCCCTGGCTAGACAAGCCCGAGGGAAGCCGGGAACGCCGAAGATCTTGA
Protein sequenceShow/hide protein sequence
MAGTTSVFGGLFVIVQTDSSPIESDMLVELSTAMEERKKKRIRVVVKCFCYFIEKGCGGGGGDEGGGWQQWRQRWLTGAELNVIVAATRKTRDNRQPTAAAKTHQERRRQ
KGQEQVLQVYLDHGHDTADCRDLKNQVESLVKRGYLKEFVGEGTKPGCHRRKFNNIKAQPKPTSSKKDEHLPTILTISRGPTGGESTTSERPWLDKPEGSRERRRS