; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027229 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027229
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold322:502977..505731
RNA-Seq ExpressionMS027229
SyntenyMS027229
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY87963.1 hypothetical protein Acr_05g0016020 [Actinidia rufa]2.9e-1432Show/hide
Query:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLD-VETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYP
        S  L EGS          R+RRGR++HR D +ET  K++SR                  D++ R+   +  G  A  T     +  + PFT  +L     
Subjt:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLD-VETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYP

Query:  GFKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEE
           +L  +L  Y+G  DPMDH  SY   M     SD   C+ FS TL G A+ WF+ L P +++ + DL+  FV  F  SC NR   A H+ +V QK  E
Subjt:  GFKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEE

Query:  DLKALTTEKRKRSREVSEEGRREIL
         LK       +   EV +   + I+
Subjt:  DLKALTTEKRKRSREVSEEGRREIL

GFY91372.1 hypothetical protein Acr_07g0015680 [Actinidia rufa]2.9e-1433.98Show/hide
Query:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM
        RSRRGR+  R D     +T  +S++ + R     LD +             AG  A  T     K  + PFT  IL        +L  +L  Y+G  DPM
Subjt:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM

Query:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE
        DH  SY   M   G SD   C+ FS TL GPA+ WFQ L P +++ + DL+  FV  F  SC NR   A H+ ++ QK  E LK       +   EV + 
Subjt:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE

Query:  GRREIL
          + I+
Subjt:  GRREIL

GFZ10877.1 hypothetical protein Acr_22g0002750 [Actinidia rufa]4.9e-1434.16Show/hide
Query:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPG
        SL L E S        R R RRGR+ HR      T+   +S++ + R     LD +              G  A  T     +    PFT  +L      
Subjt:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPG

Query:  FKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEED
          +L  +L  Y+G  DPMDH  SY   M   G SD   C+ FS TL GPA+ WF+ L P +V+ + +L+  FV  F  SC NR   A H+ +V QK  E 
Subjt:  FKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEED

Query:  LK
        LK
Subjt:  LK

PSR88450.1 Beta-porphyranase [Actinidia chinensis var. chinensis]1.1e-1333.98Show/hide
Query:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM
        RSRRGR+ HR D     +  ++S++ + R     LD +            GAG  A  T     K  + PFT  IL        +L  +L  Y+G  DPM
Subjt:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM

Query:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE
        DH  SY   M   G SD   C+ FS TL GPA+ WF+ L P +++ + DL+  FV  F  SC NR   A H+ ++ QK  E LK       +   EV + 
Subjt:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE

Query:  GRREIL
          + I+
Subjt:  GRREIL

XP_030932814.1 uncharacterized protein LOC115958537 [Quercus lobata]4.9e-1436.72Show/hide
Query:  PFTANILAINYPG-FKRLRLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEAH
        PFTA+I     P  FK   LD YDG+ DP DH  ++   M   G  D   CR F  TL GPA+ WF  +PP SV  +++L+  FV  F     ++C  + 
Subjt:  PFTANILAINYPG-FKRLRLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEAH

Query:  ILSVKQKPEEDLKALTTEKRKRSREVSE
        +L+++Q   E L++  T   K +  V E
Subjt:  ILSVKQKPEEDLKALTTEKRKRSREVSE

TrEMBL top hitse value%identityAlignment
A0A2R6PBW4 Beta-porphyranase5.3e-1433.98Show/hide
Query:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM
        RSRRGR+ HR D     +  ++S++ + R     LD +            GAG  A  T     K  + PFT  IL        +L  +L  Y+G  DPM
Subjt:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM

Query:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE
        DH  SY   M   G SD   C+ FS TL GPA+ WF+ L P +++ + DL+  FV  F  SC NR   A H+ ++ QK  E LK       +   EV + 
Subjt:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE

Query:  GRREIL
          + I+
Subjt:  GRREIL

A0A7J0DF53 Retrotrans_gag domain-containing protein7.0e-1433.5Show/hide
Query:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM
        RSRRGR+  R D     +T  +S++ + R     LD +             AG  A  T     K  + PFT  IL        +L  +L  Y+G  DPM
Subjt:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM

Query:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE
        DH  SY   M   G SD   C+ FS TL GPA+ WF+ L P +++ + DL+  FV  F  SC NR   A H+ ++ QK  E LK       +   EV + 
Subjt:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE

Query:  GRREIL
          + I+
Subjt:  GRREIL

A0A7J0EN95 Retrotrans_gag domain-containing protein1.4e-1432Show/hide
Query:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLD-VETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYP
        S  L EGS          R+RRGR++HR D +ET  K++SR                  D++ R+   +  G  A  T     +  + PFT  +L     
Subjt:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLD-VETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYP

Query:  GFKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEE
           +L  +L  Y+G  DPMDH  SY   M     SD   C+ FS TL G A+ WF+ L P +++ + DL+  FV  F  SC NR   A H+ +V QK  E
Subjt:  GFKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEE

Query:  DLKALTTEKRKRSREVSEEGRREIL
         LK       +   EV +   + I+
Subjt:  DLKALTTEKRKRSREVSEEGRREIL

A0A7J0EY61 Retrotrans_gag domain-containing protein1.4e-1433.98Show/hide
Query:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM
        RSRRGR+  R D     +T  +S++ + R     LD +             AG  A  T     K  + PFT  IL        +L  +L  Y+G  DPM
Subjt:  RSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRL--RLDKYDGSADPM

Query:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE
        DH  SY   M   G SD   C+ FS TL GPA+ WFQ L P +++ + DL+  FV  F  SC NR   A H+ ++ QK  E LK       +   EV + 
Subjt:  DHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEEDLKALTTEKRKRSREVSEE

Query:  GRREIL
          + I+
Subjt:  GRREIL

A0A7J0GJ87 Retrotrans_gag domain-containing protein2.4e-1434.16Show/hide
Query:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPG
        SL L E S        R R RRGR+ HR      T+   +S++ + R     LD +              G  A  T     +    PFT  +L      
Subjt:  SLELPEGSKDLWDKLNRGRSRRGRTVHRLDVETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPG

Query:  FKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEED
          +L  +L  Y+G  DPMDH  SY   M   G SD   C+ FS TL GPA+ WF+ L P +V+ + +L+  FV  F  SC NR   A H+ +V QK  E 
Subjt:  FKRL--RLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFSETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEA-HILSVKQKPEED

Query:  LK
        LK
Subjt:  LK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGTTATCTGTAGATTCTCCAGCAGCAAAGAAACATCGTGAACTGGAGTGTGAAGAGGAGGCAATGGTTAATAATGAATTTCTGATATCAGCAGAGGCTGTGGA
ACAGCCATGCCGGAAGCAATGAAAACCTTATGTTAGAATGTTCAAGATTTGGGAGCTCCCTCGGTATTCCGAACAAAATGTGACTTCTGATGTCACAAAAATCCTTATAT
TCTGTTTTTATGGACATCCGAAAGCTTCAAGGCATGGGATAACTTGGTCACTTTTGAGGAGGCTTCATAATCATGATGATTCTGCATGGTTGATGGGAGAAAACCCCCCA
ACCAAACGGCCCCTTAGGTTTGATGAGTTCTACCCAAAGTATGAGGAATTGATTACTAATGGGGGAGGGTGGAAACAGTGGAATGTTGGTGCGAGGTCTTTGGTAGAACA
TTTGAAAGGTTCGGAGGCTGCTCTTAGAAATGAGAATGATATAGATGTGGTTCTGGGTTCCATCTCACTAAAGGTTACTCGAGATATGAATTGTCTTCTGCTTGCACCCT
ATAATGCCCAGGAGGCATCTCTAGAACTTCCTGAAGGTTCGAAAGACCTATGGGATAAACTCAACCGAGGTCGTTCCAGACGCGGCCGGACTGTCCATCGTCTAGACGTA
GAGACCAGTACCAAGACGTCGAGTAGGTCAAGTAATGTCCAATCCAGAATTGCCCAAGAAGAGTTGGATAGAGTCAAGGAGGACATTTACAACCGAGTGAAAACTGAGTT
GGGGGCTGGGGGTGTCGCCTCCACCACCAAGTATCAGTCGTCCAAGATCGTTCAAGAACCCTTCACGGCCAACATCCTGGCTATAAACTACCCAGGATTCAAAAGACTCC
GTCTAGACAAGTACGATGGGTCGGCAGACCCCATGGACCATGCCACATCGTACCACGACGCGATGCGCCAAGCGGGATATAGCGATGTCGAGCACTGTCGGGGCTTTTCA
GAAACCCTCAACGGGCCTGCTCAGCAATGGTTCCAAGATCTCCCCCCACACTCGGTCGAGATCTACCAGGACCTGGCTAGTAAGTTCGTGGGTCAGTTCCATGACTCTTG
TATCAACAGGTGCATAGAGGCCCATATCTTGTCAGTCAAGCAGAAGCCGGAAGAGGACCTGAAGGCGTTGACGACGGAGAAGAGGAAGAGGTCGAGGGAGGTCTCAGAGG
AAGGGAGGAGGGAAATCCTTCCAATGAAGAGGCGACTCCCCCGGTCCCCCAAATCTTCCTTCATGGGATCCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGTTATCTGTAGATTCTCCAGCAGCAAAGAAACATCGTGAACTGGAGTGTGAAGAGGAGGCAATGGTTAATAATGAATTTCTGATATCAGCAGAGGCTGTGGA
ACAGCCATGCCGGAAGCAATGAAAACCTTATGTTAGAATGTTCAAGATTTGGGAGCTCCCTCGGTATTCCGAACAAAATGTGACTTCTGATGTCACAAAAATCCTTATAT
TCTGTTTTTATGGACATCCGAAAGCTTCAAGGCATGGGATAACTTGGTCACTTTTGAGGAGGCTTCATAATCATGATGATTCTGCATGGTTGATGGGAGAAAACCCCCCA
ACCAAACGGCCCCTTAGGTTTGATGAGTTCTACCCAAAGTATGAGGAATTGATTACTAATGGGGGAGGGTGGAAACAGTGGAATGTTGGTGCGAGGTCTTTGGTAGAACA
TTTGAAAGGTTCGGAGGCTGCTCTTAGAAATGAGAATGATATAGATGTGGTTCTGGGTTCCATCTCACTAAAGGTTACTCGAGATATGAATTGTCTTCTGCTTGCACCCT
ATAATGCCCAGGAGGCATCTCTAGAACTTCCTGAAGGTTCGAAAGACCTATGGGATAAACTCAACCGAGGTCGTTCCAGACGCGGCCGGACTGTCCATCGTCTAGACGTA
GAGACCAGTACCAAGACGTCGAGTAGGTCAAGTAATGTCCAATCCAGAATTGCCCAAGAAGAGTTGGATAGAGTCAAGGAGGACATTTACAACCGAGTGAAAACTGAGTT
GGGGGCTGGGGGTGTCGCCTCCACCACCAAGTATCAGTCGTCCAAGATCGTTCAAGAACCCTTCACGGCCAACATCCTGGCTATAAACTACCCAGGATTCAAAAGACTCC
GTCTAGACAAGTACGATGGGTCGGCAGACCCCATGGACCATGCCACATCGTACCACGACGCGATGCGCCAAGCGGGATATAGCGATGTCGAGCACTGTCGGGGCTTTTCA
GAAACCCTCAACGGGCCTGCTCAGCAATGGTTCCAAGATCTCCCCCCACACTCGGTCGAGATCTACCAGGACCTGGCTAGTAAGTTCGTGGGTCAGTTCCATGACTCTTG
TATCAACAGGTGCATAGAGGCCCATATCTTGTCAGTCAAGCAGAAGCCGGAAGAGGACCTGAAGGCGTTGACGACGGAGAAGAGGAAGAGGTCGAGGGAGGTCTCAGAGG
AAGGGAGGAGGGAAATCCTTCCAATGAAGAGGCGACTCCCCCGGTCCCCCAAATCTTCCTTCATGGGATCCTTCTAA
Protein sequenceShow/hide protein sequence
MVELSVDSPAAKKHRELECEEEAMVNNEFLISAEAVEQPCRKQUKPYVRMFKIWELPRYSEQNVTSDVTKILIFCFYGHPKASRHGITWSLLRRLHNHDDSAWLMGENPP
TKRPLRFDEFYPKYEELITNGGGWKQWNVGARSLVEHLKGSEAALRNENDIDVVLGSISLKVTRDMNCLLLAPYNAQEASLELPEGSKDLWDKLNRGRSRRGRTVHRLDV
ETSTKTSSRSSNVQSRIAQEELDRVKEDIYNRVKTELGAGGVASTTKYQSSKIVQEPFTANILAINYPGFKRLRLDKYDGSADPMDHATSYHDAMRQAGYSDVEHCRGFS
ETLNGPAQQWFQDLPPHSVEIYQDLASKFVGQFHDSCINRCIEAHILSVKQKPEEDLKALTTEKRKRSREVSEEGRREILPMKRRLPRSPKSSFMGSF