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MS027243 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027243
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold33:952504..952782
RNA-Seq ExpressionMS027243
SyntenyMS027243
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]2.7e-2672.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   D G LSFVN+VL SFGELAGLV NT KSSFFG G PDVEVEQLAAF  FS+ S PVRYLGVP  S + SH DCQPLLE+ VSRV S
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

XP_022157393.1 uncharacterized protein LOC111024102 [Momordica charantia]2.9e-2063.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGE--LAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF  GDLG LSF+ DVL SFG   + G      + S FGAG P+VEVEQL AFLGFS+G IPV  LGVP LS + SHRDCQPLL R VSRV S
Subjt:  MIFYPGDLGYLSFVNDVLTSFGE--LAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

XP_038876528.1 uncharacterized protein LOC120068959 [Benincasa hispida]3.1e-1450Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   +   L FV  VLT F EL+GLV N  K S F AG    EVE+LAA++  S+GS+PVRYL +P L  Q    DC PL++R  +R+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

XP_038889378.1 uncharacterized protein LOC120079297 [Benincasa hispida]4.0e-1450Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIFY  +   L F+  VLT F  L+ LV N  KSS F AG    E ++LAAF+GFS+GS+ VRYLG+P L  Q    DC PL++R  +R+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

XP_038891664.1 uncharacterized protein LOC120081057 [Benincasa hispida]6.9e-1448.91Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   +   L F+  VL  F EL+GLV N  KSS F AG    E E+LAA++G S+GS+PVRYLG+P L+ +    DC PL++R  +R+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

TrEMBL top hitse value%identityAlignment
A0A5A7V2L9 Putative reverse transcriptase7.4e-1447.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   D   L F+ + L  FGEL+GL VN  K+S F AG        LAA +GF +G++PVRYLG+P LS +    DC PL++R  SR+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

A0A5A7VHU9 F17F8.51.7e-1347.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   D   LSF+ + L  FGEL+GL VN  KSS F A   +     LAA +GF  G++PVRYLG+P L  +    DC PL++R  SR+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein6.3e-1344.57Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   D   + F+ + L  FGEL+GL  N  KS  F AG  +    QLAA +GF  G++PVRYLG+P L+ +    DC P+++R  SR+RS
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

A0A6J1D875 uncharacterized protein LOC1110178111.3e-2672.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF   D G LSFVN+VL SFGELAGLV NT KSSFFG G PDVEVEQLAAF  FS+ S PVRYLGVP  S + SH DCQPLLE+ VSRV S
Subjt:  MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

A0A6J1DT89 uncharacterized protein LOC1110241021.4e-2063.83Show/hide
Query:  MIFYPGDLGYLSFVNDVLTSFGE--LAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS
        MIF  GDLG LSF+ DVL SFG   + G      + S FGAG P+VEVEQL AFLGFS+G IPV  LGVP LS + SHRDCQPLL R VSRV S
Subjt:  MIFYPGDLGYLSFVNDVLTSFGE--LAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTCTATCCTGGGGATCTTGGTTATTTATCTTTTGTTAATGATGTTTTGACATCTTTTGGAGAGTTGGCAGGGCTTGTGGTGAATACTCACAAGAGCTCATTTTT
TGGGGCTGGTTTTCCTGATGTTGAGGTGGAGCAGTTGGCGGCTTTCTTAGGTTTTTCGATGGGTTCTATTCCTGTGCGTTATCTCGGGGTCCCGCCCCTTTCGCGCCAGT
TCTCTCATCGTGATTGTCAACCTCTGCTTGAGCGAAGTGTCTCTCGTGTTCGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTTCTATCCTGGGGATCTTGGTTATTTATCTTTTGTTAATGATGTTTTGACATCTTTTGGAGAGTTGGCAGGGCTTGTGGTGAATACTCACAAGAGCTCATTTTT
TGGGGCTGGTTTTCCTGATGTTGAGGTGGAGCAGTTGGCGGCTTTCTTAGGTTTTTCGATGGGTTCTATTCCTGTGCGTTATCTCGGGGTCCCGCCCCTTTCGCGCCAGT
TCTCTCATCGTGATTGTCAACCTCTGCTTGAGCGAAGTGTCTCTCGTGTTCGGAGTTAG
Protein sequenceShow/hide protein sequence
MIFYPGDLGYLSFVNDVLTSFGELAGLVVNTHKSSFFGAGFPDVEVEQLAAFLGFSMGSIPVRYLGVPPLSRQFSHRDCQPLLERSVSRVRS