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MS027276 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027276
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTTF-type domain-containing protein
Genome locationscaffold435:685590..691989
RNA-Seq ExpressionMS027276
SyntenyMS027276
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.9e-0834Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ---------------------------------DQYGDWLR
        MA  LG  +G VEEI G+    W GPF R+R+ +D+ +PLRRG+KL      ++WCP++                                 +QYGDWLR
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ---------------------------------DQYGDWLR
XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]3.7e-0643.55Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQDQY
        MA  LG  IG VEEI    + +W GPF R+R+ +DI +P +RGLK+      E WCP++ ++
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQDQY
XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]2.2e-0640.68Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ
        MA  LG  +G VEE+ G  + DW+ PF  +R+ +++ +PLRRGLK+      ++WCP++
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ
TrEMBL top hitse value%identityAlignment
A0A2N9HCS6 TTF-type domain-containing protein4.9e-0438.81Show/hide
Query:  RLGGVIGTVEEI-VGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWC--PIQDQYGDWLR
        R+GG +GTV ++ + E  + W GPF R+RI +DI +P++RG  +  +   ++W     + QYG WLR
Subjt:  RLGGVIGTVEEI-VGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWC--PIQDQYGDWLR
A0A6J1D765 uncharacterized protein LOC1110179024.3e-0834Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ---------------------------------DQYGDWLR
        MA  LG  +G VEEI G+    W GPF R+R+ +D+ +PLRRG+KL      ++WCP++                                 +QYGDWLR
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ---------------------------------DQYGDWLR
A0A6J1DP89 uncharacterized protein LOC1110229321.8e-0643.55Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQDQY
        MA  LG  IG VEEI    + +W GPF R+R+ +DI +P +RGLK+      E WCP++ ++
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQDQY
A0A6J1DVS4 uncharacterized protein LOC1110235551.1e-0640.68Show/hide
Query:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ
        MA  LG  +G VEE+ G  + DW+ PF  +R+ +++ +PLRRGLK+      ++WCP++
Subjt:  MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTGAGGCTGGGTGGTGTTATCGGTACGGTTGAGGAAATAGTAGGGGAGGAAACTCTCGATTGGATTGGGCCCTTTTTTCGTATTCGTATTTGCTTGGATATTCG
TCGTCCGCTCCGGCGGGGTTTGAAGCTTTGTGTTGAAACTAGTTCTGAGGTCTGGTGTCCCATCCAGGATCAATATGGCGATTGGTTGAGGCTTGGACCGACGTTTCGTG
GTGGGGCGAAGACGACTGAGGCTCCGGGTGAGGTGGTCGCGAATGCCGGTTCGATGTACCATGAGCGTTTAATGGATCCACCTGTGCCAATCGTTCCCAGTGTGTCTGTG
GACGGTGAGAGCGCTCCAGTGACGCTGATTGGGGGGTTGACGGCAGCGGCTAGCAAACCTGTCGGAGATTCTCCTTCGTCTGAACGTGGTTCCAAGGTGGCAGGTTCTTC
GAGGCCCTTGACTGTTTCTTTGCCGATGGTGTATTCTCCGCATTGTCTGGGGGACGTGGTTTCTTCAGTCTCTCAACCACCTTCCCCTCACGTGGCTCCCCAGCCGATTC
CAAGCCCCATTGGGCCATTAAATCAAAGTGGGCCTAGTATGTGGAAAAAGTGGAAGTGCTTAGCTCGTGGGCCTCTCTTGGACATGACTAATCAGATTTGTGATGAAGGG
GCTGTAGTTGGTAAAAAGCAAATTGATCTGGCAGAAGCCTTTGCTCTTGAAAAGGGTCTGTCTTTGGCAGTCGATTCGGGTTTTCGGCCTATAATCTTGGAGTCTGATTC
TTTGCGTTGTATCACCTTGCTGGAACGGGACGTTGCGGACTTGTCAGAATTTGTTGAAGTTTTTCGGCTTTGCAATTTGTTGAAGTTCTTCGTCTTGGGTTTGAGAAGTT
CTTCGGCTTTGCAGCTTGTGAAGAATTTGCAACTTGATGGAGTCTTCGGCTTCAAGTCTTGTGAAGTTCTTCGGCTTATAGCTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTGAGGCTGGGTGGTGTTATCGGTACGGTTGAGGAAATAGTAGGGGAGGAAACTCTCGATTGGATTGGGCCCTTTTTTCGTATTCGTATTTGCTTGGATATTCG
TCGTCCGCTCCGGCGGGGTTTGAAGCTTTGTGTTGAAACTAGTTCTGAGGTCTGGTGTCCCATCCAGGATCAATATGGCGATTGGTTGAGGCTTGGACCGACGTTTCGTG
GTGGGGCGAAGACGACTGAGGCTCCGGGTGAGGTGGTCGCGAATGCCGGTTCGATGTACCATGAGCGTTTAATGGATCCACCTGTGCCAATCGTTCCCAGTGTGTCTGTG
GACGGTGAGAGCGCTCCAGTGACGCTGATTGGGGGGTTGACGGCAGCGGCTAGCAAACCTGTCGGAGATTCTCCTTCGTCTGAACGTGGTTCCAAGGTGGCAGGTTCTTC
GAGGCCCTTGACTGTTTCTTTGCCGATGGTGTATTCTCCGCATTGTCTGGGGGACGTGGTTTCTTCAGTCTCTCAACCACCTTCCCCTCACGTGGCTCCCCAGCCGATTC
CAAGCCCCATTGGGCCATTAAATCAAAGTGGGCCTAGTATGTGGAAAAAGTGGAAGTGCTTAGCTCGTGGGCCTCTCTTGGACATGACTAATCAGATTTGTGATGAAGGG
GCTGTAGTTGGTAAAAAGCAAATTGATCTGGCAGAAGCCTTTGCTCTTGAAAAGGGTCTGTCTTTGGCAGTCGATTCGGGTTTTCGGCCTATAATCTTGGAGTCTGATTC
TTTGCGTTGTATCACCTTGCTGGAACGGGACGTTGCGGACTTGTCAGAATTTGTTGAAGTTTTTCGGCTTTGCAATTTGTTGAAGTTCTTCGTCTTGGGTTTGAGAAGTT
CTTCGGCTTTGCAGCTTGTGAAGAATTTGCAACTTGATGGAGTCTTCGGCTTCAAGTCTTGTGAAGTTCTTCGGCTTATAGCTTGGTGA
Protein sequenceShow/hide protein sequence
MALRLGGVIGTVEEIVGEETLDWIGPFFRIRICLDIRRPLRRGLKLCVETSSEVWCPIQDQYGDWLRLGPTFRGGAKTTEAPGEVVANAGSMYHERLMDPPVPIVPSVSV
DGESAPVTLIGGLTAAASKPVGDSPSSERGSKVAGSSRPLTVSLPMVYSPHCLGDVVSSVSQPPSPHVAPQPIPSPIGPLNQSGPSMWKKWKCLARGPLLDMTNQICDEG
AVVGKKQIDLAEAFALEKGLSLAVDSGFRPIILESDSLRCITLLERDVADLSEFVEVFRLCNLLKFFVLGLRSSSALQLVKNLQLDGVFGFKSCEVLRLIAW