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MS027291 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027291
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold373:666780..667133
RNA-Seq ExpressionMS027291
SyntenyMS027291
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146384.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]6.1e-1578.57Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTV+DLKHMARYCDGLLD +LGLKKLAKLLDVKRI  AHFA SD+L T +VYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

XP_022153955.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]4.6e-1575Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+G +++LKHMARYCDGLLD +L LKK AKLLDVKRIG AHFAG DSLLTA++YT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

XP_022154798.1 probable CCR4-associated factor 1 homolog 6 [Momordica charantia]2.4e-1991.07Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTV+DLKHM RYCDGLLD DLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

XP_022158209.1 probable CCR4-associated factor 1 homolog 5 [Momordica charantia]9.7e-2196.43Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

XP_038888808.1 probable CCR4-associated factor 1 homolog 6 [Benincasa hispida]1.1e-1687.04Show/hide
Query:  LIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        L+GTVTDLKHMARYCDGLLD +LGLKKLAKLL V RIG AHFAGSDSLLTA+VY
Subjt:  LIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

TrEMBL top hitse value%identityAlignment
A0A6J1CXZ5 Poly(A)-specific ribonuclease2.9e-1578.57Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTV+DLKHMARYCDGLLD +LGLKKLAKLLDVKRI  AHFA SD+L T +VYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

A0A6J1DIB1 putative CCR4-associated factor 1 homolog 82.2e-1575Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+G +++LKHMARYCDGLLD +L LKK AKLLDVKRIG AHFAG DSLLTA++YT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

A0A6J1DLA5 Poly(A)-specific ribonuclease1.2e-1991.07Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTV+DLKHM RYCDGLLD DLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

A0A6J1DYQ7 probable CCR4-associated factor 1 homolog 54.7e-2196.43Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        +L+GTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

A0A6J1HSR3 Poly(A)-specific ribonuclease3.2e-1478.18Show/hide
Query:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        +L+GTVTDLKHMARY D LL+ +LGLKKLAK+L V RIG AHFAGSDSLLTA+VY
Subjt:  YLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

SwissProt top hitse value%identityAlignment
Q9LEU4 Probable CCR4-associated factor 1 homolog 104.8e-0750.91Show/hide
Query:  MFYIYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLT
        + Y+Y   TV D+KH+  +C+GL     GL +LA+L+ V+R+GI H AGSDSLLT
Subjt:  MFYIYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLT

Q9SAI2 Probable CCR4-associated factor 1 homolog 62.8e-0752.94Show/hide
Query:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        TV D+KH+ ++C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  +
Subjt:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

Q9SFX6 Putative CCR4-associated factor 1 homolog 34.1e-0652.94Show/hide
Query:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT
        V D+K +A  C G L S  GL+++A +L +KR+G AH AGSDS LTA V+T
Subjt:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYT

Q9SHJ0 Probable CCR4-associated factor 1 homolog 19.7e-0853.57Show/hide
Query:  IYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        + + G V D K MA +C+G L   LGL KLA+LL + R+G AH AGSDSL+TA V+
Subjt:  IYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

Q9SKZ2 Probable CCR4-associated factor 1 homolog 74.8e-0754Show/hide
Query:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        V D+KH+ ++C+ L     GL KLA+LLDV+R+GI H AGSDSLLT+  +
Subjt:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.9e-0953.57Show/hide
Query:  IYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        + + G V D K MA +C+G L   LGL KLA+LL + R+G AH AGSDSL+TA V+
Subjt:  IYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0852.94Show/hide
Query:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        TV D+KH+ ++C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  +
Subjt:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0852.94Show/hide
Query:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        TV D+KH+ ++C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  +
Subjt:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0852.94Show/hide
Query:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        TV D+KH+ ++C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  +
Subjt:  TVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0854Show/hide
Query:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY
        V D+KH+ ++C+ L     GL KLA+LLDV+R+GI H AGSDSLLT+  +
Subjt:  VTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCACATTTCATGGCTTCTACGACATCGCTTATCTTCTGAAGCTGCTCAAAATCAAATCCATACCAATTTCCATGGCAATGTTTGCAGCCACCGCTCAGCATCTAT
TAGGTACTAATGAATCGCCAATCAATTTAAAAGCTTAATTTGATGTGTTATGGTAAATTTAATGTTTTATATTTACTTGATAGGTACTGTCACTGATTTGAAGCATATGG
CTCGCTATTGCGATGGATTGCTCGACAGCGACCTAGGGCTAAAAAAATTGGCAAAGCTACTCGACGTGAAACGAATAGGCATAGCACATTTTGCTGGTTCTGATAGTTTA
CTCACCGCTGCAGTATACACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCACATTTCATGGCTTCTACGACATCGCTTATCTTCTGAAGCTGCTCAAAATCAAATCCATACCAATTTCCATGGCAATGTTTGCAGCCACCGCTCAGCATCTAT
TAGGTACTAATGAATCGCCAATCAATTTAAAAGCTTAATTTGATGTGTTATGGTAAATTTAATGTTTTATATTTACTTGATAGGTACTGTCACTGATTTGAAGCATATGG
CTCGCTATTGCGATGGATTGCTCGACAGCGACCTAGGGCTAAAAAAATTGGCAAAGCTACTCGACGTGAAACGAATAGGCATAGCACATTTTGCTGGTTCTGATAGTTTA
CTCACCGCTGCAGTATACACCTAG
Protein sequenceShow/hide protein sequence
MDHISWLLRHRLSSEAAQNQIHTNFHGNVCSHRSASIRYUUIANQFKSLIUCVMVNLMFYIYLIGTVTDLKHMARYCDGLLDSDLGLKKLAKLLDVKRIGIAHFAGSDSL
LTAAVYT