; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027311 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027311
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionshort-chain dehydrogenase TIC 32, chloroplastic-like
Genome locationscaffold373:2274130..2275351
RNA-Seq ExpressionMS027311
SyntenyMS027311
Gene Ontology termsGO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR002347 - Short-chain dehydrogenase/reductase SDR
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145894.1 short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus]2.7e-4485.84Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM VRNL+AGR VRE IVKENPSAK+D MELDLSSMVS+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DY+SSGFPLNIL+
Subjt:  DYRSSGFPLNILM

XP_008437510.1 PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo]7.8e-4484.96Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM VRNL+AGR VRE IVKENPSAK+D MELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DY+SSGFPLNIL+
Subjt:  DYRSSGFPLNILM

XP_022156272.1 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Momordica charantia]1.0e-5199.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

XP_022156281.1 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Momordica charantia]1.0e-5199.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

XP_022156290.1 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X3 [Momordica charantia]1.0e-5199.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

TrEMBL top hitse value%identityAlignment
A0A0A0KQF8 Uncharacterized protein1.3e-4485.84Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM VRNL+AGR VRE IVKENPSAK+D MELDLSSMVS+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DY+SSGFPLNIL+
Subjt:  DYRSSGFPLNILM

A0A1S3AUS1 short-chain dehydrogenase TIC 32, chloroplastic-like3.8e-4484.96Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM VRNL+AGR VRE IVKENPSAK+D MELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DY+SSGFPLNIL+
Subjt:  DYRSSGFPLNILM

A0A6J1DPV8 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X34.9e-5299.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

A0A6J1DRL8 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X14.9e-5299.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

A0A6J1DUG7 short-chain dehydrogenase TIC 32, chloroplastic-like isoform X24.9e-5299.12Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        DYRSSGFPLNIL+
Subjt:  DYRSSGFPLNILM

SwissProt top hitse value%identityAlignment
A0A078IS66 Short-chain dehydrogenase TIC 32 A, chloroplastic1.3e-2049.06Show/hide
Query:  GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGF
        G SG+  +STAE+VT  ID   LTAI+TG ++GIG E ARVL +RG HVI+A RN  A    +E I++  P+A++D ++LDLSS+ S+R F   + +   
Subjt:  GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGF

Query:  PLNILM
        PLNIL+
Subjt:  PLNILM

A0A078ISJ6 Short-chain dehydrogenase TIC 32 B, chloroplastic7.4e-2149.06Show/hide
Query:  GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGF
        G SG+  +STAE+VT  ID   LTAI+TG ++GIG E ARVL +RG HVI+A RN  A    +E I++  P+A++D ++LDLSS+ S+R F   + +   
Subjt:  GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGF

Query:  PLNILM
        PLNIL+
Subjt:  PLNILM

A2RVM0 Short-chain dehydrogenase TIC 32, chloroplastic1.3e-3872.57Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAVRN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM

Q5F389 WW domain-containing oxidoreductase7.9e-1542.73Show/hide
Query:  SKGPSGFSY--SSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYR
        +K P+   Y  +STA E+  G D S    I+TGA++GIG ETA+  AL G +VI+A RN+  G    + I++E   AKV+ M LDL+S+ S++ FA  ++
Subjt:  SKGPSGFSY--SSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYR

Query:  SSGFPLNILM
        S   PL+IL+
Subjt:  SSGFPLNILM

Q6RVV4 Short-chain dehydrogenase TIC 32, chloroplastic5.0e-3366.67Show/hide
Query:  MW-FLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFA
        MW F   KG SGFS SSTAE+VT GID + LTAIVTGAS+GIG+ET RVLALRG HVIM VRN+ A + V++ I+K+ PSAKVD +ELDLSS+ S++KFA
Subjt:  MW-FLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFA

Query:  SDYRSSGFPLNILM
        S++ SSG PLNIL+
Subjt:  SDYRSSGFPLNILM

Arabidopsis top hitse value%identityAlignment
AT4G23420.1 NAD(P)-binding Rossmann-fold superfamily protein1.6e-3973.45Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVLALRGVHV+MAVRN  AG  V+E IVK+ P AKVDVMEL+LSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM

AT4G23420.2 NAD(P)-binding Rossmann-fold superfamily protein1.6e-3973.45Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVLALRGVHV+MAVRN  AG  V+E IVK+ P AKVDVMEL+LSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM

AT4G23430.1 NAD(P)-binding Rossmann-fold superfamily protein9.6e-4072.57Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAVRN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM

AT4G23430.2 NAD(P)-binding Rossmann-fold superfamily protein9.6e-4072.57Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAVRN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM

AT4G23430.3 NAD(P)-binding Rossmann-fold superfamily protein9.6e-4072.57Show/hide
Query:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS
        MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAVRN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS
Subjt:  MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFAS

Query:  DYRSSGFPLNILM
        +Y+S+G PLN+L+
Subjt:  DYRSSGFPLNILM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTTTTGAGAAGCAAAGGGCCCTCTGGATTTTCATACTCTTCCACAGCCGAGGAAGTTACTGACGGAATCGATGGCTCCGCTCTCACCGCCATTGTCACAGGAGC
ATCGAACGGTATCGGCTCTGAAACTGCGCGCGTTCTTGCATTACGCGGAGTCCATGTCATTATGGCTGTTAGGAACTTAGATGCTGGTAGAGGTGTTAGAGAAGCCATTG
TCAAGGAGAATCCCTCTGCAAAGGTTGATGTCATGGAGTTGGATCTTAGCTCGATGGTGTCTATAAGAAAATTTGCCTCAGATTATCGGTCGTCTGGGTTTCCACTTAAC
ATCCTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTTTTGAGAAGCAAAGGGCCCTCTGGATTTTCATACTCTTCCACAGCCGAGGAAGTTACTGACGGAATCGATGGCTCCGCTCTCACCGCCATTGTCACAGGAGC
ATCGAACGGTATCGGCTCTGAAACTGCGCGCGTTCTTGCATTACGCGGAGTCCATGTCATTATGGCTGTTAGGAACTTAGATGCTGGTAGAGGTGTTAGAGAAGCCATTG
TCAAGGAGAATCCCTCTGCAAAGGTTGATGTCATGGAGTTGGATCTTAGCTCGATGGTGTCTATAAGAAAATTTGCCTCAGATTATCGGTCGTCTGGGTTTCCACTTAAC
ATCCTCATGTAA
Protein sequenceShow/hide protein sequence
MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLN
ILM