CuGenDBv2

Gene ID	MS027426
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Genome location	scaffold23:423413..424528
RNA-Seq Expression	MS027426
Synteny	MS027426
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025558 - Domain of unknown function DUF4283 IPR040256 - Uncharacterized protein At4g02000-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG5219090.1 receptor protein [Salix suchowensis]

1.8e-28

39.39

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW V DHYL +R+W P F   + SID+ A+WV + D  ME Y+   +  IGD IGKTL++D  T  G  G FA +CVEVDLTK L + F +      I Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGGR
        EG+ LVCF CG YGH+ + CP                     +E+H EK        EE+  MD  +  E     RP+     G W +VE   RR  R
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGGR

XP_031095089.1 uncharacterized protein LOC115999374 [Ipomoea triloba]

6.8e-28

35.82

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW +L HYL ++ W P F  S   +++  +WV     P+E ++E  ++ IG  +G+ +RVD  T     G FA IC+EVD+TK L S FT+ G+ + I+Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPR-PDPSLGHGPWTLVENTKRRGGRT
        EGI LVCF CGIYGHR ++C                 P  +  +   E  A  EG+  +    +H     A  PP+ PD S   GPW +     R G R 
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPR-PDPSLGHGPWTLVENTKRRGGRT

Query:  S
        +
Subjt:  S

XP_031099805.1 uncharacterized protein LOC116004003 [Ipomoea triloba]

4.7e-29

43.28

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW +LDHYL ++ W P F  +  + +   +WVC  + P+E YN + ++ IG+ +G+T+RVD  T     G F  +CVE+D+TK L S FT+ G+ + + Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKS
        EGI LVCF+CG+YGHR++ CP  G ++  G E S
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKS

XP_031120958.1 uncharacterized protein LOC116024197 [Ipomoea triloba]

6.8e-28

37.06

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW +LDHYL ++ W P F       ++  +WV     P+E +N + ++ +G  IGK +R D+ T+    G +A ICVEVD+TK L + F +      I+Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGG
        EGI LVCF CG YGH+ + CP+ G       E   V PN   + L GE+ A KE  +E   I  + +K +     RP+     GPW L +  +RR G
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGG

XP_031124347.1 uncharacterized protein LOC116027061 [Ipomoea triloba]

3.1e-28

35.38

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW VLDHYL ++ W P F     + ++  +WV     P+E YN + ++ IG+ +G+T+RVD  T     G FA +CVE+D+TK L S FT+  + + + Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRR
        EGI LVCFSCG+YGHR + CP    T PI   ++ V+ ++D +   G+  A  +   +   +   H+ +    P        +GPW +     RR
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRR

TrEMBL top hits

e value

%identity

Alignment

A0A2K3M1B2 CCHC-type domain-containing protein (Fragment)

1.6e-27

34.02

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW + DHYL ++ WSP F  +  +I++ A+WV I   P+E Y+   +  IGD IGKT+RVD  TL+ + G +A +CVEVDLT  L + FT+   +Y+++Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKR
        EG+ L+C +CG +GH  + CP +      G+++ +V   +D S   G+ Q +   +++                         GPW +V+  KR
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKR

A0A392MA10 CCHC-type domain-containing protein (Fragment)

9.6e-28

42.75

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW + DHYL ++ WSP F  +  +I + A+WV I   P+E Y+   +  IG+ IGKT+RVD  TL+ + G +A +CVEVDLTK L + FT+ G +Y+++Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGK
        EG+ L+C +CG +GH  + CP +     +G+
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGK

A0A444YKB5 CCHC-type domain-containing protein

5.6e-28

33.84

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PW + DHYL ++ W P F+  +T + + A+W+ I + P+ELYN+  +  +G  +G  L+VD  T       FA ICVE+DL KK+   FT LG+ ++I Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDEC--PLRGGTLPIGKEKS-AVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRR
        EG+  +CF+CG YGHR+++C   + G T     + +   IP+ D    +GE Q  ++    +    +  KK +      P      GPW +V+  +R+
Subjt:  EGIRLVCFSCGIYGHRVDEC--PLRGGTLPIGKEKS-AVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRR

A0A6P4CJD6 uncharacterized protein LOC107477070

9.6e-28

33.33

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PWKV DHYL +R W P F   K SID+   W+ +   P+E+Y+   ++ IG+ +G+T++VD  T     G FA +CVEVD+TK L   + + GE Y ++Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKR--RGGR
        EGI  +CF+CG   H    CP +   + + K       + D  + + EK   +E L      ++ + K +       D +  +G W +V+  +R  RG R
Subjt:  EGIRLVCFSCGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKR--RGGR

Query:  TSRS
           S
Subjt:  TSRS

A0A6P4CYL0 uncharacterized protein LOC107482567

1.3e-27

36.36

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Query:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY
        PWK+LDHYL +R W P F  ++T ID  A W+ +    +E YN+  ++ IG+ +G+TL+VD  T     G FA +CVEVDLTK L S F + G+ + ++Y
Subjt:  PWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQY

Query:  EGIRLVCFSCGIYGHRVDEC--PLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGGR
        EG+  VCF CG +GH    C    R        ++ A   NSDV           +G +E  T     K  E        P   +GPW LV+    RG +
Subjt:  EGIRLVCFSCGIYGHRVDEC--PLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGGR

Query:  TSRSIFGSS
        ++    GSS
Subjt:  TSRSIFGSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01050.1 zinc ion binding;nucleic acid binding

5.2e-26

39.84

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Query:  GRPWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSI
        G PW+VL +YL ++ WS RF   +  I    +WV + + P   Y+   +  I   +G+ L+VD+ T++ D G FA +C+EV+L K L+    + G+RY +
Subjt:  GRPWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSI

Query:  QYEGIRLVCFSCGIYGHRVDECP
         YEG+  +C SCGIYGH V  CP
Subjt:  QYEGIRLVCFSCGIYGHRVDECP

Sequences

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CDS sequence

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ATGTTGAAGCTGCAAAATGCTGTAGAAACTGCAACATGCCAATGTCAACTGACAATTAATGCGAATACTAATGCGAATGCCAATGTCAACCAACAACCAATGTCAATGGG
ACAACGGCACCCCGAGTATCTCCATAATGGTATGATATTGTCCTGAGCATAGCCCTCACGGTTTTGCTTTTGATTCCACCCAAAAGGTCTCATACCAATGGAGATAATTG
TCCTCCCTTATATATCATGATCACCCTTTTCCCTAACGAATGTTGGACTTTGTTTGCACTAAAACCCAACAGTTTGGAACTTAGGAGGATCGGGAGAGAGTTCTGTCGGA
AGGCCTTGGAAAGTTCTTGACCACTATTTGGCAATGCGAAGCTGGTCCCCTAGATTTATGGCTTCAAAGACGTCGATTGATAGAGCAGCTTTGTGGGTTTGTATTCTTGA
CCGTCCAATGGAATTGTACAACGAAATTAGGATGAAGGGAATTGGAGATTTCATTGGCAAAACCTTGAGAGTTGATTTAAAGACTCTGTCAGGGGACATGGGAAGTTTCG
CGGGAATTTGTGTAGAAGTGGATCTCACCAAGAAGCTTCGTTCGGACTTTACAGTGCTGGGGGAGCGGTATAGTATTCAATATGAAGGAATCCGCTTGGTGTGTTTCAGT
TGTGGAATTTATGGACATAGGGTGGATGAGTGTCCTTTACGAGGTGGAACTTTACCAATTGGTAAAGAAAAGTCGGCTGTGATTCCAAATTCTGATGTAAGTGAGTTGCA
CGGTGAGAAGCAAGCTTTGAAGGAGGGGCTGTTGGAAGAAGTTACGATTATGGATCATCATAAGAAAGCAGAGGCGACTTTTCCTCCAAGGCCTGATCCCTCATTAGGGC
ATGGTCCATGGACTCTGGTGGAAAACACTAAACGAAGGGGAGGGAGGACTTCAAGATCAATATTTGGTAGTAGTGTTTTGAAAATCATTTTCCTCGTAGGACACGGGTCA
TCTGTTTTGGCTCTATTATCTGAACATGGGGGCCCGAGCTCTTCGATTTCTCAATTGAGGATTGCTACTGAAGCCAGGGATGGTAGGGATTATATGGAACAGGATGTAGC
AATTGGTCTGGAGTAG

mRNA sequence

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Protein sequence

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MLKLQNAVETATCQCQLTINANTNANANVNQQPMSMGQRHPEYLHNGMILSUAUPSRFCFUFHPKGLIPMEIIVLPYISUSPFSLTNVGLCLHUNPTVWNLGGSGESSVG
RPWKVLDHYLAMRSWSPRFMASKTSIDRAALWVCILDRPMELYNEIRMKGIGDFIGKTLRVDLKTLSGDMGSFAGICVEVDLTKKLRSDFTVLGERYSIQYEGIRLVCFS
CGIYGHRVDECPLRGGTLPIGKEKSAVIPNSDVSELHGEKQALKEGLLEEVTIMDHHKKAEATFPPRPDPSLGHGPWTLVENTKRRGGRTSRSIFGSSVLKIIFLVGHGS
SVLALLSEHGGPSSSISQLRIATEARDGRDYMEQDVAIGLE

MS027426 (gene) of Bitter gourd (TR) v1 genome