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MS027427 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027427
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCACTA en-spm transposon protein
Genome locationscaffold23:489669..490989
RNA-Seq ExpressionMS027427
SyntenyMS027427
Gene Ontology termsNA
InterPro domainsIPR004252 - Probable transposase, Ptta/En/Spm, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156286.1 uncharacterized protein LOC111023212 [Momordica charantia]8.3e-5590.52Show/hide
Query:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV
        EITKKNKKN+AKLP+NHRAGSKSFLQLQHELK+KEGSD+GPVDLF E+HYNEKDG VNDNAEDAYENMQNLIKAPTQEGCEP+T PEACRKVLGDRPDHV
Subjt:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV

Query:  KGLGYGPQPTPCRRGS
        KGLGYGPQPT C+RGS
Subjt:  KGLGYGPQPTPCRRGS

XP_038887408.1 poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]2.8e-2655.56Show/hide
Query:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG
        T+ NKK+++K+PY HR GSKSF+Q+Q E+K+KEG DV  VDLFR++H+ EKDGWVN+NA+DAY  MQ L++A  QE   P++  E C++VLG R  ++KG
Subjt:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG

Query:  LGYGPQPT
        LG  P+P+
Subjt:  LGYGPQPT

XP_038887409.1 poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]2.8e-2655.56Show/hide
Query:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG
        T+ NKK+++K+PY HR GSKSF+Q+Q E+K+KEG DV  VDLFR++H+ EKDGWVN+NA+DAY  MQ L++A  QE   P++  E C++VLG R  ++KG
Subjt:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG

Query:  LGYGPQPT
        LG  P+P+
Subjt:  LGYGPQPT

XP_038887410.1 poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida]8.1e-1857.65Show/hide
Query:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPE
        T+ NKK+++K+PY HR GSKSF+Q+Q E+K+KEG DV  VDLFR++H+ EKDGWVN+NA+DAY  MQ L++A  QE   P++  E
Subjt:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPE

XP_038887413.1 uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]2.8e-2655.56Show/hide
Query:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG
        T+ NKK+++K+PY HR GSKSF+Q+Q E+K+KEG DV  VDLFR++H+ EKDGWVN+NA+DAY  MQ L++A  QE   P++  E C++VLG R  ++KG
Subjt:  TKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKG

Query:  LGYGPQPT
        LG  P+P+
Subjt:  LGYGPQPT

TrEMBL top hitse value%identityAlignment
A0A5A7SM06 CACTA en-spm transposon protein6.7e-1847.41Show/hide
Query:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV
        E ++ NK  + K PYNH +GSKSFLQ Q+EL  + G  V  V+LFRE H      +V+  AEDAY  M  L   PT EG +P++  E C +VLG RP + 
Subjt:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV

Query:  KGLGYGPQPTPCRRGS
        KGLG+GP+P   R  S
Subjt:  KGLGYGPQPTPCRRGS

A0A5A7ULK1 CACTA en-spm transposon protein5.1e-1847.41Show/hide
Query:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV
        E ++ NK  + K PYNH +GSKSFLQ Q+EL  + G  V  V+LFRE H      +V+  AEDA+  M  L   PT EG +P++  E C +VLG RPD+ 
Subjt:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV

Query:  KGLGYGPQPTPCRRGS
        KGLG+GP+P   R  S
Subjt:  KGLGYGPQPTPCRRGS

A0A5A7V484 CACTA en-spm transposon protein6.7e-1846.22Show/hide
Query:  PKGEITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRP
        P  E ++ NK  + K PYNH +GSKSFLQ Q+EL  + G  V  V+LFRE H      +V+  AEDA+  M  L   PT EG +P++  E C +VLG RP
Subjt:  PKGEITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRP

Query:  DHVKGLGYGPQPTPCRRGS
         + KGLG+GP+   CR  S
Subjt:  DHVKGLGYGPQPTPCRRGS

A0A5D3CC80 CACTA en-spm transposon protein5.1e-1847.41Show/hide
Query:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV
        E ++ NK  + K PYNH +GSKSFLQ Q+EL  + G  V  V+LFRE H      +V+  AEDA+  M  L   PT EG +P++  E C +VLG RPD+ 
Subjt:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV

Query:  KGLGYGPQPTPCRRGS
        KGLG+GP+P   R  S
Subjt:  KGLGYGPQPTPCRRGS

A0A6J1DUH3 uncharacterized protein LOC1110232124.0e-5590.52Show/hide
Query:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV
        EITKKNKKN+AKLP+NHRAGSKSFLQLQHELK+KEGSD+GPVDLF E+HYNEKDG VNDNAEDAYENMQNLIKAPTQEGCEP+T PEACRKVLGDRPDHV
Subjt:  EITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDAYENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHV

Query:  KGLGYGPQPTPCRRGS
        KGLGYGPQPT C+RGS
Subjt:  KGLGYGPQPTPCRRGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCTTATAGAGTCATGGTGGGTCTAGGTCAAGAGCAGGATGCAGCTGCCGTTAACCAGATGGCTCGCCTTACGAATATCAATTATGCATCAGGCTCTAAATCGAA
AAGAAAACGTGCCTATGGACCTAAAGGAGAAATTACAAAGAAGAACAAAAAGAATCAAGCAAAGCTCCCTTACAACCATCGAGCTGGTTCCAAGTCATTCCTTCAATTAC
AACATGAATTGAAAATGAAAGAAGGTTCTGACGTTGGTCCGGTGGATTTGTTCCGCGAGAATCATTACAATGAAAAGGATGGATGGGTGAATGATAATGCAGAAGATGCA
TATGAGAACATGCAAAATTTGATTAAAGCACCAACGCAAGAAGGATGTGAACCAATAACGCTACCAGAGGCTTGTAGAAAAGTTTTAGGTGATCGACCAGACCATGTTAA
AGGTCTTGGTTATGGCCCACAACCCACCCCGTGCAGAAGAGGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTATCTTATAGAGTCATGGTGGGTCTAGGTCAAGAGCAGGATGCAGCTGCCGTTAACCAGATGGCTCGCCTTACGAATATCAATTATGCATCAGGCTCTAAATCGAA
AAGAAAACGTGCCTATGGACCTAAAGGAGAAATTACAAAGAAGAACAAAAAGAATCAAGCAAAGCTCCCTTACAACCATCGAGCTGGTTCCAAGTCATTCCTTCAATTAC
AACATGAATTGAAAATGAAAGAAGGTTCTGACGTTGGTCCGGTGGATTTGTTCCGCGAGAATCATTACAATGAAAAGGATGGATGGGTGAATGATAATGCAGAAGATGCA
TATGAGAACATGCAAAATTTGATTAAAGCACCAACGCAAGAAGGATGTGAACCAATAACGCTACCAGAGGCTTGTAGAAAAGTTTTAGGTGATCGACCAGACCATGTTAA
AGGTCTTGGTTATGGCCCACAACCCACCCCGTGCAGAAGAGGCTCATAA
Protein sequenceShow/hide protein sequence
MLSYRVMVGLGQEQDAAAVNQMARLTNINYASGSKSKRKRAYGPKGEITKKNKKNQAKLPYNHRAGSKSFLQLQHELKMKEGSDVGPVDLFRENHYNEKDGWVNDNAEDA
YENMQNLIKAPTQEGCEPITLPEACRKVLGDRPDHVKGLGYGPQPTPCRRGS