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MS027535 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027535
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold313:328014..328547
RNA-Seq ExpressionMS027535
SyntenyMS027535
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062354.1 E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo var. makuwa]5.3e-3161.48Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT
        MAKFSV GE+D  D GPSSP GKR+R S RINATVD+P ++E RE      F+SDKE++E +E DQ KRHR  EI + + E   K+ALWS  SC+K  K 
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT

Query:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSP
        N  GSV MFLIDPEVLDCSICCEPL++PIFQ   P
Subjt:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSP

XP_008460511.1 PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]4.8e-3259.03Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT
        MAKFSV GE+D  D GPSSP GKR+R S RINATVD+P ++E RE      F+SDKE++E +E DQ KRHR  EI + + E   K+ALWS  SC+K  K 
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT

Query:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
        N  GSV MFLIDPEVLDCSICCEPL++PIFQ  +     +S CN
Subjt:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

XP_022141698.1 E3 ubiquitin-protein ligase SINA-like 10 [Momordica charantia]2.1e-8394.01Show/hide
Query:  MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ
        MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ
Subjt:  MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ

Query:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
        QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQ  +     +S CN
Subjt:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

XP_022990964.1 E3 ubiquitin-protein ligase SINA-like 10 [Cucurbita maxima]1.3e-3260.69Show/hide
Query:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK
        MAKFSVGGE+DGEDG   SSP  KR+R S RINA V++P  N  RE      FD  KE+T ++E +QRKRHRI EI +QV E  T+KAL SV SCSK +K
Subjt:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK

Query:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
         N  GS+ MFLIDPEVLDCSICCEPL+VPIFQ  +     +S CN
Subjt:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

XP_023534163.1 E3 ubiquitin-protein ligase SINA-like 10 [Cucurbita pepo subsp. pepo]3.2e-3658.68Show/hide
Query:  RGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNE-----PREAFDSDKEQTETEELDQRKRHRIHEIHQ
        RG L+DN+LLP PR R GI  +MAKFSVGGE+DGEDG   SSP  KR+R S RINA V++P  N+       + FD  KE+T ++E +QRKRHRI  I +
Subjt:  RGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNE-----PREAFDSDKEQTETEELDQRKRHRIHEIHQ

Query:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
        QV E  T+KAL SV SCSK +K N  GS+ MFLIDPEVLDCSICCEPL+VPIFQ  +     +S CN
Subjt:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

TrEMBL top hitse value%identityAlignment
A0A1S3CD49 RING-type E3 ubiquitin transferase2.3e-3259.03Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT
        MAKFSV GE+D  D GPSSP GKR+R S RINATVD+P ++E RE      F+SDKE++E +E DQ KRHR  EI + + E   K+ALWS  SC+K  K 
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT

Query:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
        N  GSV MFLIDPEVLDCSICCEPL++PIFQ  +     +S CN
Subjt:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

A0A5D3DSQ5 E3 ubiquitin-protein ligase SINA-like 72.6e-3161.48Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT
        MAKFSV GE+D  D GPSSP GKR+R S RINATVD+P ++E RE      F+SDKE++E +E DQ KRHR  EI + + E   K+ALWS  SC+K  K 
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKT

Query:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSP
        N  GSV MFLIDPEVLDCSICCEPL++PIFQ   P
Subjt:  NGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSP

A0A6J1CL96 RING-type E3 ubiquitin transferase1.0e-8394.01Show/hide
Query:  MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ
        MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ
Subjt:  MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQ

Query:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
        QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQ  +     +S CN
Subjt:  QVPEGATKKALWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

A0A6J1GYB0 RING-type E3 ubiquitin transferase1.3e-3057.24Show/hide
Query:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNE-----PREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK
        MAKFSVGGE+DGEDG   SSP  KR+R S RINA V++P  N+       + FD  KE+T ++E +QRKRHRI  I +QV E  T+ AL SV SCS+ +K
Subjt:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNE-----PREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK

Query:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
         N  GS+ MFLIDPEVLDCSICCEPL+VPIFQ  +     +S CN
Subjt:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

A0A6J1JTG5 RING-type E3 ubiquitin transferase6.2e-3360.69Show/hide
Query:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK
        MAKFSVGGE+DGEDG   SSP  KR+R S RINA V++P  N  RE      FD  KE+T ++E +QRKRHRI EI +QV E  T+KAL SV SCSK +K
Subjt:  MAKFSVGGEDDGEDG-GPSSPTGKRRRPSSRINATVDYPHQNEPRE-----AFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLK

Query:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN
         N  GS+ MFLIDPEVLDCSICCEPL+VPIFQ  +     +S CN
Subjt:  TNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCN

SwissProt top hitse value%identityAlignment
Q84K34 E3 ubiquitin-protein ligase SINA-like 101.2e-0626.24Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKTNGGGS
        MA+FSV G DDGE    ++   ++R+    I+   +    ++   + + D+++T+ + +      R         E   ++  +     S++  ++    
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKTNGGGS

Query:  VPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCNFV
        + + L+DP+VLDC ICCEPL +PIFQ  +     T  C  V
Subjt:  VPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCNFV

Arabidopsis top hitse value%identityAlignment
AT5G37930.1 Protein with RING/U-box and TRAF-like domains8.9e-0826.24Show/hide
Query:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKTNGGGS
        MA+FSV G DDGE    ++   ++R+    I+   +    ++   + + D+++T+ + +      R         E   ++  +     S++  ++    
Subjt:  MAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKALWSVTSCSKTLKTNGGGS

Query:  VPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCNFV
        + + L+DP+VLDC ICCEPL +PIFQ  +     T  C  V
Subjt:  VPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCNFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATGGAAGAGGATGCGTGGCCATCTTTCGGATAACGATCTTCTTCCTGTTCCTCGCGGGAGAAGGGGCATCGCATCGAAAATGGCGAAGTTCTCGGTTGGTGGAGA
AGACGACGGCGAAGACGGCGGCCCAAGTAGTCCTACGGGGAAGAGGAGGAGGCCCTCTTCTCGAATCAACGCCACAGTTGATTATCCCCACCAGAATGAACCACGCGAGG
CCTTCGATTCCGACAAGGAACAAACTGAGACCGAGGAATTAGACCAGAGGAAGCGACATCGGATTCATGAAATACACCAACAAGTGCCAGAGGGCGCTACTAAAAAGGCA
CTGTGGTCGGTCACGTCCTGTTCCAAAACCCTAAAGACAAACGGCGGCGGCTCTGTTCCGATGTTCTTGATTGACCCAGAAGTGTTGGATTGCTCCATTTGCTGCGAACC
CTTGACCGTCCCCATCTTCCAGGTCCGCTCTCCTCAATCTCTCCATACTTCTGTTTGTAATTTTGTCCTACACTTTACTTCGATTCCCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATGGAAGAGGATGCGTGGCCATCTTTCGGATAACGATCTTCTTCCTGTTCCTCGCGGGAGAAGGGGCATCGCATCGAAAATGGCGAAGTTCTCGGTTGGTGGAGA
AGACGACGGCGAAGACGGCGGCCCAAGTAGTCCTACGGGGAAGAGGAGGAGGCCCTCTTCTCGAATCAACGCCACAGTTGATTATCCCCACCAGAATGAACCACGCGAGG
CCTTCGATTCCGACAAGGAACAAACTGAGACCGAGGAATTAGACCAGAGGAAGCGACATCGGATTCATGAAATACACCAACAAGTGCCAGAGGGCGCTACTAAAAAGGCA
CTGTGGTCGGTCACGTCCTGTTCCAAAACCCTAAAGACAAACGGCGGCGGCTCTGTTCCGATGTTCTTGATTGACCCAGAAGTGTTGGATTGCTCCATTTGCTGCGAACC
CTTGACCGTCCCCATCTTCCAGGTCCGCTCTCCTCAATCTCTCCATACTTCTGTTTGTAATTTTGTCCTACACTTTACTTCGATTCCCAGTTGA
Protein sequenceShow/hide protein sequence
MRWKRMRGHLSDNDLLPVPRGRRGIASKMAKFSVGGEDDGEDGGPSSPTGKRRRPSSRINATVDYPHQNEPREAFDSDKEQTETEELDQRKRHRIHEIHQQVPEGATKKA
LWSVTSCSKTLKTNGGGSVPMFLIDPEVLDCSICCEPLTVPIFQVRSPQSLHTSVCNFVLHFTSIPS