; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027540 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027540
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolcalcin Ole e 3
Genome locationscaffold313:381013..381267
RNA-Seq ExpressionMS027540
SyntenyMS027540
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140303.1 polcalcin Ole e 3 [Cucumis sativus]4.5e-3695.24Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

XP_016902555.1 PREDICTED: polcalcin Ole e 3 [Cucumis melo]1.0e-3594.05Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

XP_022141635.1 polcalcin Bet v 4 [Momordica charantia]8.1e-38100Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

XP_022993440.1 polcalcin Ole e 3-like [Cucurbita maxima]1.2e-3388.1Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+ISYEEFTDFARANRGL++DVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

XP_038875780.1 polcalcin Ole e 3 [Benincasa hispida]4.5e-3695.24Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKISA+ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

TrEMBL top hitse value%identityAlignment
A0A0A0KQB8 Uncharacterized protein2.2e-3695.24Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

A0A1S4E3J8 polcalcin Ole e 34.8e-3694.05Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

A0A5A7V407 Polcalcin Ole e 34.8e-3694.05Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQD+ ER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

A0A6J1CIN1 polcalcin Bet v 43.9e-38100Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

A0A6J1JYI8 polcalcin Ole e 3-like5.9e-3488.1Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+ISYEEFTDFARANRGL++DVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 34.3e-3484.52Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADDPQ+  E +RIFKRFDANGDGKIS++ELGE LKTLGSVT +E+QRMMAEIDTDGDGFIS+EEFT FARANRGLVKDVAKIF
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

O81701 Polcalcin Aln g 41.1e-3283.53Show/hide
Query:  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADD PQD+ E +RIFK FDANGDGKISA+ELG+ALKTLGSVT DEV+ MMAEIDTDGDGFIS++EFT+FARANRGLVKDVAKIF
Subjt:  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

Q39419 Polcalcin Bet v 45.1e-3587.06Show/hide
Query:  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MADD PQDK ER+RIFKRFDANGDGKISAAELGEALKTLGS+T DEV+ MMAEIDTDGDGFIS++EFTDF RANRGL+KDVAKIF
Subjt:  MADD-PQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

Q84V36 Polcalcin Che a 38.2e-3382.93Show/hide
Query:  DDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        D PQD  +R+RIFKRFD NGDGKIS++ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS++EFTDFARANRGLVKDV+KIF
Subjt:  DDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

Q8VWY6 Polcalcin Nic t 16.3e-3379.76Show/hide
Query:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        MA+DPQD  +R+RIFKRFD NGDGKIS+AELGE LK LGSVT++EVQ MMAE+DTDGDGFISYEEF +FARANRGL+KDVAK+F
Subjt:  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein9.0e-1143.66Show/hide
Query:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARAN
        D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+ +EF+   R++
Subjt:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARAN

AT1G18210.2 Calcium-binding EF-hand family protein9.0e-1143.66Show/hide
Query:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARAN
        D  +  E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+ +EF+   R++
Subjt:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARAN

AT1G73630.1 EF hand calcium-binding protein family3.3e-1346.67Show/hide
Query:  PQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVK
        P   +E  ++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ EEF    R++   V+
Subjt:  PQDKVERDRIFKRFDANGDGKISAAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVK

AT3G03430.1 Calcium-binding EF-hand family protein3.5e-3177.78Show/hide
Query:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        D  +K E DRIFK+FDANGDGKISAAELG+ALK LGSVT ++++RMMAEIDTDGDG+ISY+EF DFA ANRGL+KDVAKIF
Subjt:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF

AT5G17480.1 pollen calcium-binding protein 12.4e-3283.95Show/hide
Query:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
        D  +K E DRIFK+FDANGDGKISAAEL EALKTLGSVTAD+V+RMMAEIDTDGDG ISY+EFTDFA ANRGL+KDVAKIF
Subjt:  DPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGAC
GCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACC
GTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGATCCTCAAGACAAGGTTGAACGTGACCGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGCAAGATCTCTGCAGCCGAGCTCGGAGAAGCCTTGAAGAC
GCTCGGCTCCGTCACCGCGGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTACGAAGAGTTCACAGATTTTGCCCGTGCCAACC
GTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA
Protein sequenceShow/hide protein sequence
MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF