; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027551 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027551
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold313:1508144..1509352
RNA-Seq ExpressionMS027551
SyntenyMS027551
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146384.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]2.4e-18495Show/hide
Query:  MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQL
        MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWS NLREELELLNEYLPEFPVV ID EFPGFL CTPKGISEEEFYHCLRFNVNRLNILQL
Subjt:  MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQL

Query:  GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMA
        GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFY+LKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDI YLLKLLKIKSIPISMA
Subjt:  GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMA

Query:  TFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPS
        TFATTAQHLLGTVSDLKHMARYCDGLLDG+LGLKKLAKLLDVKRI  AHFA SD+L T SVYTKMKQIFKLPLEQCEGFLYGLPYPI GF+SV KIIDPS
Subjt:  TFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPS

Query:  TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIVG
        TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNG SVIVG
Subjt:  TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIVG

XP_022153955.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]1.3e-10570.83Show/hide
Query:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFN-VNRLNILQLGLTLADQKGNIAMTWEF
        MEK I R S  APRS+   +EVWSHNL EELELLNEY+PEF VV ID             I        LR + + RLNILQLGLTL DQK N+AMT EF
Subjt:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFN-VNRLNILQLGLTLADQKGNIAMTWEF

Query:  NFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLK
        NFRDFDH+SDM+ +S LD FLKN GFDFY+LKK GI  E+FTTLFLPIC SG+I+R ITFHGFY+IAYLLK LKIK IPI MATFA TAQHLLG +S+LK
Subjt:  NFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLK

Query:  HMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPP
        HMARYCDGLLDG+L LKK AKLLDVKRIGTAHFAG DSLLTAS+YTKMKQ+FKLPLEQCEGFLY LP+ IK F S++KII+PS  TPP
Subjt:  HMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPP

XP_022154798.1 probable CCR4-associated factor 1 homolog 6 [Momordica charantia]8.8e-13973.14Show/hide
Query:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEF-----------------------------PGFLLCTPKGISEEEFYHCLR
        MEK    KS  APRS+  NREVWS+NL +ELE+LNEYLPEFP+VAIDTEF                             PGFL  TPKG+SEEEFY CLR
Subjt:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEF-----------------------------PGFLLCTPKGISEEEFYHCLR

Query:  FNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKL
        FNVNRLNILQLGLTLA+Q GN+AMTWEFNFRDFDH+SDME VSSLDSFLKNKGFDFY+LK+ GIA EDFTTLFLPICRSG+I+RWITFHGFYDIAYLLKL
Subjt:  FNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKL

Query:  LKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKG
        LKIK IPISMATFA TAQHLLGTVSDLKHM RYCDGLLDGDLGLKKLAKLLDVKRIG AHFAGSDSLLTA+VYTKMKQ+FK+P+EQ EGFLYGLP+ I+ 
Subjt:  LKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKG

Query:  FRSVVKIIDPSTMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIV
        F+ +VKI+DPS MTPPPP   +   L F S  P  + I SSKL GHSV V
Subjt:  FRSVVKIIDPSTMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIV

XP_022928830.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]6.0e-10368.8Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF
        REVWSHNL EE+EL+  YL EFP+VAIDTEFPGFL  TPKG+S+EEFY CL+FNVNRL+ILQLGLTL D  G I MTWEFNF+DFD +S+ME V SLDSF
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF

Query:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA
        LKNKGF+F +L+  GIA ++F+  F P+ RSG+I++WITFHG YDIAYL+K   I S+P SM+ FA  A HLLGTV+DLKHMARY D L +G+LGLKKLA
Subjt:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT
        KLL + R+GTAHFAGSDSLLTASVY KMK I K+  +  EGFLYGLPYPI+G+R  V I+DPS +T
Subjt:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT

XP_023550519.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]6.6e-10268.8Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF
        REVWS+NL EE+EL+  YL EFP+VA+DTEFPGFL  TPKG+S+EEFY CL+FNVNRL+ILQLGLTL D+ G I MTWEFNF+DFD +S+ME V SLDSF
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF

Query:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA
        LKNKGF+F +L+  GIA E+F+  F P+ RS +I+RWITFHG YDIAYL+K   I S+P SM+ FA  A HLLGTV+DLKHMARY D L +G+LGLKKLA
Subjt:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT
        KLL + RIGTAHFAGSDSLLTASVY KMK I K+  +  EGFLYGLPYPI+G+R  V I+DPS +T
Subjt:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT

TrEMBL top hitse value%identityAlignment
A0A6J1CXZ5 Poly(A)-specific ribonuclease1.1e-18495Show/hide
Query:  MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQL
        MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWS NLREELELLNEYLPEFPVV ID EFPGFL CTPKGISEEEFYHCLRFNVNRLNILQL
Subjt:  MDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQL

Query:  GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMA
        GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFY+LKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDI YLLKLLKIKSIPISMA
Subjt:  GLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMA

Query:  TFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPS
        TFATTAQHLLGTVSDLKHMARYCDGLLDG+LGLKKLAKLLDVKRI  AHFA SD+L T SVYTKMKQIFKLPLEQCEGFLYGLPYPI GF+SV KIIDPS
Subjt:  TFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPS

Query:  TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIVG
        TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNG SVIVG
Subjt:  TMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIVG

A0A6J1DIB1 putative CCR4-associated factor 1 homolog 86.2e-10670.83Show/hide
Query:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFN-VNRLNILQLGLTLADQKGNIAMTWEF
        MEK I R S  APRS+   +EVWSHNL EELELLNEY+PEF VV ID             I        LR + + RLNILQLGLTL DQK N+AMT EF
Subjt:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFN-VNRLNILQLGLTLADQKGNIAMTWEF

Query:  NFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLK
        NFRDFDH+SDM+ +S LD FLKN GFDFY+LKK GI  E+FTTLFLPIC SG+I+R ITFHGFY+IAYLLK LKIK IPI MATFA TAQHLLG +S+LK
Subjt:  NFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLK

Query:  HMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPP
        HMARYCDGLLDG+L LKK AKLLDVKRIGTAHFAG DSLLTAS+YTKMKQ+FKLPLEQCEGFLY LP+ IK F S++KII+PS  TPP
Subjt:  HMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPP

A0A6J1DLA5 Poly(A)-specific ribonuclease4.3e-13973.14Show/hide
Query:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEF-----------------------------PGFLLCTPKGISEEEFYHCLR
        MEK    KS  APRS+  NREVWS+NL +ELE+LNEYLPEFP+VAIDTEF                             PGFL  TPKG+SEEEFY CLR
Subjt:  MEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEF-----------------------------PGFLLCTPKGISEEEFYHCLR

Query:  FNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKL
        FNVNRLNILQLGLTLA+Q GN+AMTWEFNFRDFDH+SDME VSSLDSFLKNKGFDFY+LK+ GIA EDFTTLFLPICRSG+I+RWITFHGFYDIAYLLKL
Subjt:  FNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKL

Query:  LKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKG
        LKIK IPISMATFA TAQHLLGTVSDLKHM RYCDGLLDGDLGLKKLAKLLDVKRIG AHFAGSDSLLTA+VYTKMKQ+FK+P+EQ EGFLYGLP+ I+ 
Subjt:  LKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKG

Query:  FRSVVKIIDPSTMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIV
        F+ +VKI+DPS MTPPPP   +   L F S  P  + I SSKL GHSV V
Subjt:  FRSVVKIIDPSTMTPPPPLPSKFSILSFCSSTPLLVGIKSSKLNGHSVIV

A0A6J1ESM7 Poly(A)-specific ribonuclease2.9e-10368.8Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF
        REVWSHNL EE+EL+  YL EFP+VAIDTEFPGFL  TPKG+S+EEFY CL+FNVNRL+ILQLGLTL D  G I MTWEFNF+DFD +S+ME V SLDSF
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF

Query:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA
        LKNKGF+F +L+  GIA ++F+  F P+ RSG+I++WITFHG YDIAYL+K   I S+P SM+ FA  A HLLGTV+DLKHMARY D L +G+LGLKKLA
Subjt:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT
        KLL + R+GTAHFAGSDSLLTASVY KMK I K+  +  EGFLYGLPYPI+G+R  V I+DPS +T
Subjt:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT

A0A6J1HL76 Poly(A)-specific ribonuclease7.1e-10269.92Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF
        R+VWSHNL EE+EL+ + L EFP+VAIDTEFPGFL  TPKG+S+EEFY CL+FNVNRL+ILQLGLTL +  G I MTWEFNFRDFD +S+ME V SLDSF
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF

Query:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA
        LKNKGF+F  L+ YGIA E+F T F PI RSG+I RWITFHG YDIAYL+K   I+ +P SM+ FA TA H+LGTV+DLKHMA Y   LLDG+LGLKKLA
Subjt:  LKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT
        KLL V R GTAHFAGSDSLLTASVY KMK I K+     EGFLYGLPYPI+G+R  V I+DPS +T
Subjt:  KLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMT

SwissProt top hitse value%identityAlignment
Q9LXM2 Probable CCR4-associated factor 1 homolog 96.7e-4136.5Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTP-KGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI---------AMTWEFNFRDFDHVSD
        REVW+ NL  E EL++E + ++P +++DTEFPG +  +  +  + ++ Y  L+ NV+ L+++Q+GLTL+D  GN+            WEFNFRDFD   D
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTP-KGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI---------AMTWEFNFRDFDHVSD

Query:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLP---ICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLG-TVSDLKHMARYC
             S++  L+ +G DF R  + G+  E F  L +    +C   +   W+TFH  YD  YL+K+L  + +P ++  F    + L G  V D+KHM ++C
Subjt:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLP---ICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLG-TVSDLKHMARYC

Query:  DGLLDGDLGLKKLAKLLDVKR-IGTAHFAGSDSLLTASVYTKMKQIFKLP--LEQCEGFLYGL
        +  L G  GL ++A+ L+V R +G  H AGSDSLLT   + +M+ ++ +    E+  G LYGL
Subjt:  DGLLDGDLGLKKLAKLLDVKR-IGTAHFAGSDSLLTASVYTKMKQIFKLP--LEQCEGFLYGL

Q9S9P2 Probable CCR4-associated factor 1 homolog 23.4e-4539.33Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF
        REVW+HNL +E+ L+ + + +FP VA+DTEFPG +  T        P  I  E  Y  L+ NVN L ++QLGLTL+D+KGN+          W+FNFR+F
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF

Query:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA
        + +SDM  + S++  L+    D  +  + G+  + F  L +   +  + +I  W+TFH  YD  YLLKLL  K +P  ++ F    +     V D+K++ 
Subjt:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP
         +C  L     GL+K+A+LL VKR+G +H AGSDSLLT   + KMK+ F    L +  GFL+GL  P
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.3e-4440.23Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD
        REVW+ NL+EE++L+ + + +FP VA+DTEFPG ++  P G    + +  Y  L+ NVN L ++QLGLT ++++GN+          W+FNFR+FD  SD
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD

Query:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC
        +  + S++  LK  G D  +    GI  + F  L +    SG +      W+TFH  YD  YLLKLL  +++P S   F         TV D+KH+ ++C
Subjt:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC

Query:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL
        + L     GL KLA+LL+V+R+G  H AGSDSLLT+  + K+K+ F + PL +  G LYGL
Subjt:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL

Q9SHJ0 Probable CCR4-associated factor 1 homolog 14.7e-4236.5Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF
        R VW  N+ EE+  + E L  FP++A DTE+PG +  T    S +E Y  ++ NV    ++Q G TL + KG I   WE NF +F   SD  +  S++ F
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSF

Query:  LKNKGFDFYRLKKYGIAQ--EDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKK
        L+  G D  +++  G+      F    + + RS +   ++TF G YD AY L +L    +P +   FAT    + G V D K MA +C+GL +  LGL K
Subjt:  LKNKGFDFYRLKKYGIAQ--EDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYCDGLLDGDLGLKK

Query:  LAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPPPPLP
        LA+LL + R+G AH AGSDSL+TA V+ K+K +++       G +YG+     G  ++V    P+ + P P LP
Subjt:  LAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPPPPLP

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.8e-4640.46Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKG---ISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA--------MTWEFNFRDFDHVS
        REVW+ NL  E+ L+ E + +FP VA+DTEFPG ++C P G    + E  Y  L+ NVN L ++QLGLT +D+KGN+           W+FNFR+FD  S
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKG---ISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA--------MTWEFNFRDFDHVS

Query:  DMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARY
        D+    S++  L+  G DF +  ++GI  + F  L +    SG +      W+TFH  YD  YLLKLL  +++P +   F          V D+KH+ ++
Subjt:  DMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARY

Query:  CDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL
        C+ L     GL KLA+LLDV+R+G  H AGSDSLLT+  + K+++ F +  +E+  G LYGL
Subjt:  CDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL

Arabidopsis top hitse value%identityAlignment
AT1G15920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-4639.33Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF
        REVW+HNL +E+ L+ + + +FP VA+DTEFPG +  T        P  I  E  Y  L+ NVN L ++QLGLTL+D+KGN+          W+FNFR+F
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF

Query:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA
        + +SDM  + S++  L+    D  +  + G+  + F  L +   +  + +I  W+TFH  YD  YLLKLL  K +P  ++ F    +     V D+K++ 
Subjt:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP
         +C  L     GL+K+A+LL VKR+G +H AGSDSLLT   + KMK+ F    L +  GFL+GL  P
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP

AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-4639.33Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF
        REVW+HNL +E+ L+ + + +FP VA+DTEFPG +  T        P  I  E  Y  L+ NVN L ++QLGLTL+D+KGN+          W+FNFR+F
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCT--------PKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNI-------AMTWEFNFRDF

Query:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA
        + +SDM  + S++  L+    D  +  + G+  + F  L +   +  + +I  W+TFH  YD  YLLKLL  K +P  ++ F    +     V D+K++ 
Subjt:  DHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFL--PICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP
         +C  L     GL+K+A+LL VKR+G +H AGSDSLLT   + KMK+ F    L +  GFL+GL  P
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGLPYP

AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.3e-4640.23Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD
        REVW+ NL+EE++L+ + + +FP VA+DTEFPG ++  P G    + +  Y  L+ NVN L ++QLGLT ++++GN+          W+FNFR+FD  SD
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD

Query:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC
        +  + S++  LK  G D  +    GI  + F  L +    SG +      W+TFH  YD  YLLKLL  +++P S   F         TV D+KH+ ++C
Subjt:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC

Query:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL
        + L     GL KLA+LL+V+R+G  H AGSDSLLT+  + K+K+ F + PL +  G LYGL
Subjt:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.3e-4640.23Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD
        REVW+ NL+EE++L+ + + +FP VA+DTEFPG ++  P G    + +  Y  L+ NVN L ++QLGLT ++++GN+          W+FNFR+FD  SD
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGI---SEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA-------MTWEFNFRDFDHVSD

Query:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC
        +  + S++  LK  G D  +    GI  + F  L +    SG +      W+TFH  YD  YLLKLL  +++P S   F         TV D+KH+ ++C
Subjt:  MEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARYC

Query:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL
        + L     GL KLA+LL+V+R+G  H AGSDSLLT+  + K+K+ F + PL +  G LYGL
Subjt:  DGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-4740.46Show/hide
Query:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKG---ISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA--------MTWEFNFRDFDHVS
        REVW+ NL  E+ L+ E + +FP VA+DTEFPG ++C P G    + E  Y  L+ NVN L ++QLGLT +D+KGN+           W+FNFR+FD  S
Subjt:  REVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKG---ISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIA--------MTWEFNFRDFDHVS

Query:  DMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARY
        D+    S++  L+  G DF +  ++GI  + F  L +    SG +      W+TFH  YD  YLLKLL  +++P +   F          V D+KH+ ++
Subjt:  DMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQI----KRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMARY

Query:  CDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL
        C+ L     GL KLA+LLDV+R+G  H AGSDSLLT+  + K+++ F +  +E+  G LYGL
Subjt:  CDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKL-PLEQCEGFLYGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAAATGGACGATAAGCGTAATGACAATATATTTAGAGTGATGAAGTCACTGGAAAACATGGAGAAGGCGATTGTTAGAAAGTCAACAGCAGCTCCAAGATCCAT
CTGCCATAATCGAGAGGTTTGGTCTCACAATCTTCGTGAAGAATTAGAGCTACTGAATGAGTATCTTCCAGAGTTTCCAGTAGTCGCCATCGATACGGAGTTTCCAGGAT
TTCTCTTGTGCACTCCGAAAGGCATCTCGGAGGAAGAATTCTACCATTGTCTCCGATTCAATGTGAACCGATTGAACATACTCCAACTCGGTCTCACACTCGCCGATCAG
AAGGGAAATATAGCAATGACTTGGGAGTTTAACTTCAGAGATTTTGATCACGTTAGCGATATGGAAGACGTTTCTTCGCTGGATTCATTTCTGAAGAACAAAGGGTTTGA
TTTCTACAGATTGAAGAAATACGGAATAGCTCAAGAGGATTTCACTACATTGTTTCTACCGATATGTCGTAGTGGTCAAATCAAGAGATGGATCACATTTCACGGCTTCT
ACGACATTGCTTATCTTCTCAAGCTGCTCAAAATCAAATCCATACCGATTTCCATGGCAACGTTTGCCACCACCGCTCAACATCTATTAGGTACGGTTAGCGATCTGAAG
CATATGGCTCGCTACTGTGATGGACTGCTCGACGGCGACCTAGGGCTAAAAAAATTGGCCAAGCTGCTCGACGTGAAGCGTATAGGCACTGCACATTTTGCTGGTTCCGA
TAGTTTACTCACAGCTTCAGTATACACCAAGATGAAGCAAATTTTCAAGCTTCCGCTAGAGCAATGCGAAGGGTTTCTCTATGGCTTGCCTTATCCGATTAAGGGTTTTC
GGTCAGTCGTGAAGATTATCGATCCATCCACCATGACTCCTCCTCCACCACTACCATCGAAGTTCTCAATATTGTCTTTTTGCAGCTCTACGCCGCTTTTGGTTGGTATT
AAGTCTAGCAAGTTAAATGGTCATTCAGTCATAGTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAAATGGACGATAAGCGTAATGACAATATATTTAGAGTGATGAAGTCACTGGAAAACATGGAGAAGGCGATTGTTAGAAAGTCAACAGCAGCTCCAAGATCCAT
CTGCCATAATCGAGAGGTTTGGTCTCACAATCTTCGTGAAGAATTAGAGCTACTGAATGAGTATCTTCCAGAGTTTCCAGTAGTCGCCATCGATACGGAGTTTCCAGGAT
TTCTCTTGTGCACTCCGAAAGGCATCTCGGAGGAAGAATTCTACCATTGTCTCCGATTCAATGTGAACCGATTGAACATACTCCAACTCGGTCTCACACTCGCCGATCAG
AAGGGAAATATAGCAATGACTTGGGAGTTTAACTTCAGAGATTTTGATCACGTTAGCGATATGGAAGACGTTTCTTCGCTGGATTCATTTCTGAAGAACAAAGGGTTTGA
TTTCTACAGATTGAAGAAATACGGAATAGCTCAAGAGGATTTCACTACATTGTTTCTACCGATATGTCGTAGTGGTCAAATCAAGAGATGGATCACATTTCACGGCTTCT
ACGACATTGCTTATCTTCTCAAGCTGCTCAAAATCAAATCCATACCGATTTCCATGGCAACGTTTGCCACCACCGCTCAACATCTATTAGGTACGGTTAGCGATCTGAAG
CATATGGCTCGCTACTGTGATGGACTGCTCGACGGCGACCTAGGGCTAAAAAAATTGGCCAAGCTGCTCGACGTGAAGCGTATAGGCACTGCACATTTTGCTGGTTCCGA
TAGTTTACTCACAGCTTCAGTATACACCAAGATGAAGCAAATTTTCAAGCTTCCGCTAGAGCAATGCGAAGGGTTTCTCTATGGCTTGCCTTATCCGATTAAGGGTTTTC
GGTCAGTCGTGAAGATTATCGATCCATCCACCATGACTCCTCCTCCACCACTACCATCGAAGTTCTCAATATTGTCTTTTTGCAGCTCTACGCCGCTTTTGGTTGGTATT
AAGTCTAGCAAGTTAAATGGTCATTCAGTCATAGTTGGTTGA
Protein sequenceShow/hide protein sequence
MGKMDDKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSHNLREELELLNEYLPEFPVVAIDTEFPGFLLCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQ
KGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYRLKKYGIAQEDFTTLFLPICRSGQIKRWITFHGFYDIAYLLKLLKIKSIPISMATFATTAQHLLGTVSDLK
HMARYCDGLLDGDLGLKKLAKLLDVKRIGTAHFAGSDSLLTASVYTKMKQIFKLPLEQCEGFLYGLPYPIKGFRSVVKIIDPSTMTPPPPLPSKFSILSFCSSTPLLVGI
KSSKLNGHSVIVG