; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027558 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027558
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein COP1 SUPPRESSOR 2-like
Genome locationscaffold313:1716548..1717805
RNA-Seq ExpressionMS027558
SyntenyMS027558
Gene Ontology termsNA
InterPro domainsIPR010756 - Telomere length and silencing protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032622.1 putative protein C9orf78 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-8396.51Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYK+R+LQDDGSGSKPTD+GTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

XP_008466165.1 PREDICTED: uncharacterized protein C9orf78 homolog [Cucumis melo]5.7e-8497.09Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYKDRSLQDDGSGSKP +TGTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

XP_022146355.1 uncharacterized protein C9orf78 homolog [Momordica charantia]1.2e-86100Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

XP_022922521.1 protein COP1 SUPPRESSOR 2-like [Cucurbita moschata]2.2e-8396.51Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYK+R+LQDDGSGSKPTD+GTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

XP_022990156.1 protein COP1 SUPPRESSOR 2-like [Cucurbita maxima]2.2e-8396.51Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYK+R+LQDDGSGSKPTD+GTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

TrEMBL top hitse value%identityAlignment
A0A1S3CQV4 uncharacterized protein C9orf78 homolog2.8e-8497.09Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYKDRSLQDDGSGSKP +TGTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

A0A5D3BEG5 Hepatocellular carcinoma-associated antigen 592.8e-8497.09Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYKDRSLQDDGSGSKP +TGTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

A0A6J1CX27 uncharacterized protein C9orf78 homolog5.9e-87100Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

A0A6J1E915 protein COP1 SUPPRESSOR 2-like1.0e-8396.51Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYK+R+LQDDGSGSKPTD+GTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

A0A6J1JM60 protein COP1 SUPPRESSOR 2-like1.0e-8396.51Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
        L YIEQELAKKRGRTVE VEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSS

Query:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        YSADYFHRGRDYAEKLRR+HPELYK+R+LQDDGSGSKPTD+GTEAAGQRQAATDEFMLERFRKRERHRVMRR
Subjt:  YSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

SwissProt top hitse value%identityAlignment
F4HVZ5 Protein COP1 SUPPRESSOR 21.2e-6373.86Show/hide
Query:  YIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSSYS
        YIEQELAKKRGR ++  E  EN+LK+ EDELYKIP+HLKVK+R+S ESSTQWTTGIAEVQLPIE+KLKNIEETEAAKKLLQE+R +GR KSEFSIPSSYS
Subjt:  YIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSSYS

Query:  ADYFHRGRDYAEKLRRDHPELYKDR-SLQDDGSGSKP-----TDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        ADYF RG+DYAEKLRR+HPELYKDR   Q DG  +KP     T+   ++   RQAATD+ MLERFRKRER+RVMRR
Subjt:  ADYFHRGRDYAEKLRRDHPELYKDR-SLQDDGSGSKP-----TDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR

Q3TQI7 Telomere length and silencing protein 1 homolog4.3e-1034.29Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEFSI
        + YIE EL K++G   +  + A+   K AED LY++PE+++V      E   S Q  +GI EV L I+ K+KNI  TE AK +LL E++   +      +
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEFSI

Query:  PSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER
        P++ + +Y    R Y E+L    R + E  K R L+  G   KP    +    +R A   ATD++  E+F+K  R
Subjt:  PSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER

Q5RC87 Telomere length and silencing protein 1 homolog2.8e-0934.46Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDL--KQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEF
        + YIE EL K++G     VE  E  +  K AED LY++PE+++V      E   S Q  +GI EV   I+ K+KNI  TE AK +LL E++   +     
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDL--KQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEF

Query:  SIPSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER
         +P++ + +Y    R Y E+L    R + E  K R L+  G   KP    +    +R A   ATD++  E+F+K  R
Subjt:  SIPSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER

Q9NZ63 Telomere length and silencing protein 1 homolog5.7e-1035.03Show/hide
Query:  LMYIEQELAKKRGRTVEAVEGAENDL--KQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEF
        + YIE EL K++G     VE  E  +  K AED LY++PE+++V      E   S Q  +GI EV L I+ K+KNI  TE AK +LL E++   +     
Subjt:  LMYIEQELAKKRGRTVEAVEGAENDL--KQAEDELYKIPEHLKVKRRNSNES--STQWTTGIAEVQLPIEFKLKNIEETEAAK-KLLQEKRFVGRSKSEF

Query:  SIPSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER
         +P++ + +Y    R Y E+L    R + E  K R L+  G   KP    +    +R A   ATD++  E+F+K  R
Subjt:  SIPSSYSADYFHRGRDYAEKLR---RDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQA---ATDEFMLERFRKRER

Arabidopsis top hitse value%identityAlignment
AT1G02330.1 CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).8.2e-6573.86Show/hide
Query:  YIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSSYS
        YIEQELAKKRGR ++  E  EN+LK+ EDELYKIP+HLKVK+R+S ESSTQWTTGIAEVQLPIE+KLKNIEETEAAKKLLQE+R +GR KSEFSIPSSYS
Subjt:  YIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSIPSSYS

Query:  ADYFHRGRDYAEKLRRDHPELYKDR-SLQDDGSGSKP-----TDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR
        ADYF RG+DYAEKLRR+HPELYKDR   Q DG  +KP     T+   ++   RQAATD+ MLERFRKRER+RVMRR
Subjt:  ADYFHRGRDYAEKLRRDHPELYKDR-SLQDDGSGSKP-----TDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAAGTTGGAGCTTTGATGACTTCTCTCTACAGGTTGATGTATATCGAACAAGAACTGGCGAAGAAAAGGGGAAGGACTGTAGAGGCTGTAGAAGGAGCTGAGAA
TGACTTAAAACAGGCAGAAGACGAACTATACAAAATCCCAGAGCATCTTAAAGTGAAAAGACGAAATTCTAATGAAAGTTCCACTCAGTGGACTACAGGGATCGCAGAGG
TTCAGCTTCCAATTGAATTTAAGTTGAAGAACATTGAGGAAACTGAGGCTGCAAAAAAGCTTTTGCAGGAAAAGAGATTTGTGGGTCGGTCAAAATCAGAGTTTAGCATC
CCGTCAAGTTATAGTGCTGATTACTTCCACCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGATCATCCTGAGCTATACAAGGATAGAAGTTTGCAAGATGATGGTTC
CGGCTCCAAACCAACTGATACTGGCACAGAGGCTGCAGGACAAAGGCAGGCCGCCACAGATGAATTCATGCTAGAACGCTTCCGGAAACGGGAACGTCATCGTGTGATGC
GGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAAGTTGGAGCTTTGATGACTTCTCTCTACAGGTTGATGTATATCGAACAAGAACTGGCGAAGAAAAGGGGAAGGACTGTAGAGGCTGTAGAAGGAGCTGAGAA
TGACTTAAAACAGGCAGAAGACGAACTATACAAAATCCCAGAGCATCTTAAAGTGAAAAGACGAAATTCTAATGAAAGTTCCACTCAGTGGACTACAGGGATCGCAGAGG
TTCAGCTTCCAATTGAATTTAAGTTGAAGAACATTGAGGAAACTGAGGCTGCAAAAAAGCTTTTGCAGGAAAAGAGATTTGTGGGTCGGTCAAAATCAGAGTTTAGCATC
CCGTCAAGTTATAGTGCTGATTACTTCCACCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGATCATCCTGAGCTATACAAGGATAGAAGTTTGCAAGATGATGGTTC
CGGCTCCAAACCAACTGATACTGGCACAGAGGCTGCAGGACAAAGGCAGGCCGCCACAGATGAATTCATGCTAGAACGCTTCCGGAAACGGGAACGTCATCGTGTGATGC
GGAGATAA
Protein sequenceShow/hide protein sequence
MLKVGALMTSLYRLMYIEQELAKKRGRTVEAVEGAENDLKQAEDELYKIPEHLKVKRRNSNESSTQWTTGIAEVQLPIEFKLKNIEETEAAKKLLQEKRFVGRSKSEFSI
PSSYSADYFHRGRDYAEKLRRDHPELYKDRSLQDDGSGSKPTDTGTEAAGQRQAATDEFMLERFRKRERHRVMRR