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MS027568 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027568
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRhomboid domain-containing protein
Genome locationscaffold238:182920..186634
RNA-Seq ExpressionMS027568
SyntenyMS027568
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011445.1 RHOMBOID-like protein 10, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.3e-1070.21Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E     G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
XP_022155015.1 RHOMBOID-like protein 10, chloroplastic [Momordica charantia]3.3e-1897.87Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        VGGFIGGAAISWLLGPAWKHESSSAFGGT FSDKAPIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
XP_022963855.1 RHOMBOID-like protein 10, chloroplastic [Cucurbita moschata]6.7e-1172.34Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E S   G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
XP_022967604.1 RHOMBOID-like protein 10, chloroplastic [Cucurbita maxima]6.7e-1172.34Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E S   G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
XP_023511751.1 RHOMBOID-like protein 10, chloroplastic [Cucurbita pepo subsp. pepo]6.7e-1172.34Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E S   G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
TrEMBL top hitse value%identityAlignment
A0A6J1DL86 RHOMBOID-like protein 10, chloroplastic1.6e-1897.87Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        VGGFIGGAAISWLLGPAWKHESSSAFGGT FSDKAPIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
A0A6J1HJ61 RHOMBOID-like protein 10, chloroplastic3.2e-1172.34Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E S   G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
A0A6J1HX69 RHOMBOID-like protein 10, chloroplastic3.2e-1172.34Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GGF+GG A SWLLGPAWK E S   G  TF+D+APIFYLINWRKRT
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
A0A6J5V6X2 Uncharacterized protein3.6e-1061.82Show/hide
Query:  ISVARNVEVGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +SV    + GG +GG A SWLLGPAWK+ES S+ G   FSDKAPIFYLIN +KR+
Subjt:  ISVARNVEVGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
W9SBH9 E3 ubiquitin-protein ligase RING18.0e-1068.09Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
        +GG +GGAA SWLLGPAW +ES S  G   FSD+APIFYLINW KR+
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWRKRT
SwissProt top hitse value%identityAlignment
F4ICF4 RHOMBOID-like protein 10, chloroplastic4.7e-0750Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
        +GG +GG A++WLLGP WK+E ++  G   F D API  L+ WR
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
Arabidopsis top hitse value%identityAlignment
AT1G25290.1 RHOMBOID-like protein 103.3e-0850Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
        +GG +GG A++WLLGP WK+E ++  G   F D API  L+ WR
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
AT1G25290.2 RHOMBOID-like protein 103.3e-0850Show/hide
Query:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
        +GG +GG A++WLLGP WK+E ++  G   F D API  L+ WR
Subjt:  VGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATGGACGACGACGATAGGGGCATGTGGCGACGAACAATTAGAGAGGTGAGAGATGAGAGTGATGAAATTGGAGACGAAATCATGATAGATAAGAGATATGAGAT
CAAGAAGGCGAATATGCTGCTAGAAGCTTTCTGCTTGCTCGCGAATTGTGGGTATGCTCCGAAGATATCAGTTGCAAGAAACGTCGAGGTAGGAGGGTTTATAGGGGGGG
CTGCAATATCATGGCTTCTTGGACCTGCCTGGAAACATGAATCTTCCTCTGCATTTGGTGGAACAACATTTTCAGACAAGGCTCCAATTTTTTACCTCATCAATTGGAGA
AAAAGAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGACGATGGACGACGACGATAGGGGCATGTGGCGACGAACAATTAGAGAGGTGAGAGATGAGAGTGATGAAATTGGAGACGAAATCATGATAGATAAGAGATATGAGAT
CAAGAAGGCGAATATGCTGCTAGAAGCTTTCTGCTTGCTCGCGAATTGTGGGTATGCTCCGAAGATATCAGTTGCAAGAAACGTCGAGGTAGGAGGGTTTATAGGGGGGG
CTGCAATATCATGGCTTCTTGGACCTGCCTGGAAACATGAATCTTCCTCTGCATTTGGTGGAACAACATTTTCAGACAAGGCTCCAATTTTTTACCTCATCAATTGGAGA
AAAAGAACATAG
Protein sequenceShow/hide protein sequence
MTMDDDDRGMWRRTIREVRDESDEIGDEIMIDKRYEIKKANMLLEAFCLLANCGYAPKISVARNVEVGGFIGGAAISWLLGPAWKHESSSAFGGTTFSDKAPIFYLINWR
KRT