; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027590 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027590
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEthylene-responsive transcription factor
Genome locationscaffold89:35405..35833
RNA-Seq ExpressionMS027590
SyntenyMS027590
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029328.1 Ethylene-responsive transcription factor RAP2-1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-5384.78Show/hide
Query:  SSAGEKRKQ--RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE
        S+  EKRKQ   RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIE
Subjt:  SSAGEKRKQ--RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE

Query:  VGARVD--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        VGARVD  A++TSL QSKPIS+KPDLNQFP PE+SDED
Subjt:  VGARVD--AHQTSLSQSKPISDKPDLNQFPHPETSDED

XP_004142875.1 ethylene-responsive transcription factor RAP2-1 [Cucumis sativus]2.1e-5488.72Show/hide
Query:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV
        EKRKQ  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARV
Subjt:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV

Query:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        D  AHQTSL QSKPISDKPDLNQFP PE+S ED
Subjt:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED

XP_008444599.1 PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo]3.3e-5589.47Show/hide
Query:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV
        EKRKQ  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARV
Subjt:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV

Query:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        D  AHQTSL QSKPISDKPDLNQFP PE+SDED
Subjt:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED

XP_022131468.1 ethylene-responsive transcription factor RAP2-1-like [Momordica charantia]1.7e-75100Show/hide
Query:  MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI
        MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI
Subjt:  MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI

Query:  RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED
        RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED
Subjt:  RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED

XP_038884237.1 ethylene-responsive transcription factor RAP2-1-like [Benincasa hispida]2.5e-5588.81Show/hide
Query:  EKRKQR--RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGAR
        EKRKQ+  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGAR
Subjt:  EKRKQR--RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGAR

Query:  VD--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        VD  AHQTSL QSKPISDKPDLNQFP PE+SDED
Subjt:  VD--AHQTSLSQSKPISDKPDLNQFPHPETSDED

TrEMBL top hitse value%identityAlignment
A0A0A0LR87 AP2/ERF domain-containing protein1.0e-5488.72Show/hide
Query:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV
        EKRKQ  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARV
Subjt:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV

Query:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        D  AHQTSL QSKPISDKPDLNQFP PE+S ED
Subjt:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED

A0A1S3BAR1 ethylene-responsive transcription factor RAP2-11.6e-5589.47Show/hide
Query:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV
        EKRKQ  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARV
Subjt:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV

Query:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        D  AHQTSL QSKPISDKPDLNQFP PE+SDED
Subjt:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED

A0A5A7V5C8 Ethylene-responsive transcription factor RAP2-11.6e-5589.47Show/hide
Query:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV
        EKRKQ  RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIEVGARV
Subjt:  EKRKQR-RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGARV

Query:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        D  AHQTSL QSKPISDKPDLNQFP PE+SDED
Subjt:  D--AHQTSLSQSKPISDKPDLNQFPHPETSDED

A0A6J1BTG4 ethylene-responsive transcription factor RAP2-1-like8.1e-76100Show/hide
Query:  MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI
        MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI
Subjt:  MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSI

Query:  RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED
        RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED
Subjt:  RKRAIEVGARVDAHQTSLSQSKPISDKPDLNQFPHPETSDED

A0A6J1HCJ9 ethylene-responsive transcription factor RAP2-1-like5.1e-5484.78Show/hide
Query:  SSAGEKRKQ--RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE
        S+  EKRKQ   RQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LI  DM DH L DVSPSSIRKRAIE
Subjt:  SSAGEKRKQ--RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE

Query:  VGARVD--AHQTSLSQSKPISDKPDLNQFPHPETSDED
        VGARVD  A++TSL QSKPIS+KPDLNQFP PE+SDED
Subjt:  VGARVD--AHQTSLSQSKPISDKPDLNQFPHPETSDED

SwissProt top hitse value%identityAlignment
O22174 Ethylene-responsive transcription factor ERF0081.8e-3254.05Show/hide
Query:  QRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFH---DMDDHHLPDVSPSSIRKRAIEVGARVDA
        ++R  KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLNFPEL+             D+S + IR++A EVGA+VDA
Subjt:  QRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFH---DMDDHHLPDVSPSSIRKRAIEVGARVDA

Query:  HQTSL-------------------SQSKPISDKPDLNQFPHPETSDED
           ++                          ++ DLN+ P PE SD D
Subjt:  HQTSL-------------------SQSKPISDKPDLNQFPHPETSDED

Q8LC30 Ethylene-responsive transcription factor RAP2-13.0e-3560.14Show/hide
Query:  SAGEKRKQRRQE---------KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHL-----PDV
        S   KR+Q  QE         KPYRGIR RKWGKWVAEIREPNKRSR+WLGSYTT +AAARAYD AVFYLRGPSARLNFP+L+  + D  HL      D+
Subjt:  SAGEKRKQRRQE---------KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHL-----PDV

Query:  SPSSIRKRAIEVGARVDA----HQTSLSQSKPISDKPDLNQFP
          + IR++A EVGARVDA       S++ S P   KPDLNQ P
Subjt:  SPSSIRKRAIEVGARVDA----HQTSLSQSKPISDKPDLNQFP

Q8W3M3 Ethylene-responsive transcription factor RAP2-93.3e-3467.24Show/hide
Query:  EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMD--DHHLPDVSPSSIRKRAIEVGARVDAHQTSL
        EK Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T VAAARAYDTAVFYLRGPSARLNFPE +F D +  +    D+SP+ IRK+A EVGARVDA    L
Subjt:  EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMD--DHHLPDVSPSSIRKRAIEVGARVDAHQTSL

Query:  SQSKPISDKPDLNQFP
             + +  D+N+ P
Subjt:  SQSKPISDKPDLNQFP

Q9FH94 Ethylene-responsive transcription factor ERF0101.6e-3347.95Show/hide
Query:  RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELI----FHDMDDHHLPDVSPSSIRKRAIEVGARVDA
        R++++PY+GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+ARLNFPEL+    F D       D+S ++IRK+A EVGA+VDA
Subjt:  RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELI----FHDMDDHHLPDVSPSSIRKRAIEVGARVDA

Query:  HQTSLSQSK------------------------------------------PISDKPDLNQFPHPETSDED
          T++  ++                                           + D+ DLN+ P PE+SDE+
Subjt:  HQTSLSQSK------------------------------------------PISDKPDLNQFPHPETSDED

Q9SNE1 Ethylene-responsive transcription factor ERF0116.2e-3351.33Show/hide
Query:  GTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE
        G +   +   + ++E+P++GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LNFPEL    +      D+S ++IRK+A E
Subjt:  GTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE

Query:  VGARVDAHQTSLSQSKP--------------ISDKPDLNQFPHPETSDED
        VGA+VDA   ++ Q+                + +  DLN+ P PE  D+D
Subjt:  VGARVDAHQTSLSQSKP--------------ISDKPDLNQFPHPETSDED

Arabidopsis top hitse value%identityAlignment
AT1G46768.1 related to AP2 12.1e-3660.14Show/hide
Query:  SAGEKRKQRRQE---------KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHL-----PDV
        S   KR+Q  QE         KPYRGIR RKWGKWVAEIREPNKRSR+WLGSYTT +AAARAYD AVFYLRGPSARLNFP+L+  + D  HL      D+
Subjt:  SAGEKRKQRRQE---------KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHL-----PDV

Query:  SPSSIRKRAIEVGARVDA----HQTSLSQSKPISDKPDLNQFP
          + IR++A EVGARVDA       S++ S P   KPDLNQ P
Subjt:  SPSSIRKRAIEVGARVDA----HQTSLSQSKPISDKPDLNQFP

AT2G23340.1 DREB and EAR motif protein 31.3e-3354.05Show/hide
Query:  QRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFH---DMDDHHLPDVSPSSIRKRAIEVGARVDA
        ++R  KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLNFPEL+             D+S + IR++A EVGA+VDA
Subjt:  QRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFH---DMDDHHLPDVSPSSIRKRAIEVGARVDA

Query:  HQTSL-------------------SQSKPISDKPDLNQFPHPETSDED
           ++                          ++ DLN+ P PE SD D
Subjt:  HQTSL-------------------SQSKPISDKPDLNQFPHPETSDED

AT3G50260.1 cooperatively regulated by ethylene and jasmonate 14.4e-3451.33Show/hide
Query:  GTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE
        G +   +   + ++E+P++GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LNFPEL    +      D+S ++IRK+A E
Subjt:  GTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIE

Query:  VGARVDAHQTSLSQSKP--------------ISDKPDLNQFPHPETSDED
        VGA+VDA   ++ Q+                + +  DLN+ P PE  D+D
Subjt:  VGARVDAHQTSLSQSKP--------------ISDKPDLNQFPHPETSDED

AT4G06746.1 related to AP2 92.3e-3567.24Show/hide
Query:  EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMD--DHHLPDVSPSSIRKRAIEVGARVDAHQTSL
        EK Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T VAAARAYDTAVFYLRGPSARLNFPE +F D +  +    D+SP+ IRK+A EVGARVDA    L
Subjt:  EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMD--DHHLPDVSPSSIRKRAIEVGARVDAHQTSL

Query:  SQSKPISDKPDLNQFP
             + +  D+N+ P
Subjt:  SQSKPISDKPDLNQFP

AT5G67190.1 DREB and EAR motif protein 21.2e-3447.95Show/hide
Query:  RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELI----FHDMDDHHLPDVSPSSIRKRAIEVGARVDA
        R++++PY+GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+ARLNFPEL+    F D       D+S ++IRK+A EVGA+VDA
Subjt:  RRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELI----FHDMDDHHLPDVSPSSIRKRAIEVGARVDA

Query:  HQTSLSQSK------------------------------------------PISDKPDLNQFPHPETSDED
          T++  ++                                           + D+ DLN+ P PE+SDE+
Subjt:  HQTSLSQSK------------------------------------------PISDKPDLNQFPHPETSDED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAGAGTGGTGCGGCACGAGTTCGGCGGGCGAGAAGCGGAAGCAGCGGCGGCAGGAGAAGCCGTACAGAGGGATACGGATGAGGAAGTGGGGGAAGTGGGTGGC
CGAAATCAGAGAACCCAACAAGAGGTCTCGCATTTGGCTGGGTTCCTACACCACCCCCGTCGCCGCCGCCAGAGCCTACGACACCGCCGTCTTCTACCTCCGTGGCCCCT
CCGCCCGCCTCAACTTTCCCGAATTGATCTTCCACGACATGGACGATCACCACCTCCCCGACGTCTCCCCTTCTTCAATCCGCAAAAGAGCCATAGAGGTCGGCGCCAGA
GTCGACGCCCACCAAACTTCTCTCTCCCAATCCAAACCCATTTCCGACAAGCCCGATTTGAACCAGTTTCCGCACCCCGAAACCTCAGACGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAGAGTGGTGCGGCACGAGTTCGGCGGGCGAGAAGCGGAAGCAGCGGCGGCAGGAGAAGCCGTACAGAGGGATACGGATGAGGAAGTGGGGGAAGTGGGTGGC
CGAAATCAGAGAACCCAACAAGAGGTCTCGCATTTGGCTGGGTTCCTACACCACCCCCGTCGCCGCCGCCAGAGCCTACGACACCGCCGTCTTCTACCTCCGTGGCCCCT
CCGCCCGCCTCAACTTTCCCGAATTGATCTTCCACGACATGGACGATCACCACCTCCCCGACGTCTCCCCTTCTTCAATCCGCAAAAGAGCCATAGAGGTCGGCGCCAGA
GTCGACGCCCACCAAACTTCTCTCTCCCAATCCAAACCCATTTCCGACAAGCCCGATTTGAACCAGTTTCCGCACCCCGAAACCTCAGACGAAGATTGA
Protein sequenceShow/hide protein sequence
MEGEWCGTSSAGEKRKQRRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELIFHDMDDHHLPDVSPSSIRKRAIEVGAR
VDAHQTSLSQSKPISDKPDLNQFPHPETSDED