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MS027621 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027621
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold20:1579144..1579476
RNA-Seq ExpressionMS027621
SyntenyMS027621
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143330.1 E3 ubiquitin-protein ligase SINA-like 10 [Momordica charantia]1.1e-24100Show/hide
Query:  MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
        MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
Subjt:  MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
TrEMBL top hitse value%identityAlignment
A0A6J1CNI6 RING-type E3 ubiquitin transferase5.3e-25100Show/hide
Query:  MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
        MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
Subjt:  MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G37930.1 Protein with RING/U-box and TRAF-like domains3.0e-0447.37Show/hide
Query:  NANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ
        N+ +SS  +        ++P+VLDC ICCEPL IP+FQ
Subjt:  NANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGAAGAGTAAGATCCTACAAAGTGCTCAACGCGAAGAAGCTGAAGAAAATCCGCCGGATTCAGAGAGCAATGCGAATACGTCGAGTAAGAAGAGGAGGATCGA
GTCTCAAAATGTAACGATAAATCCGGAAGTTCTCGACTGTTACATTTGCTGCGAGCCATTGGCGATTCCGGTTTTCCAGGATAAAATGGAAATGAATGTTGGATTCGATT
CGTCTTCCTTGCTTCTGCGCTTGATCGTATGTCGTGGCCGTATTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGAAGAGTAAGATCCTACAAAGTGCTCAACGCGAAGAAGCTGAAGAAAATCCGCCGGATTCAGAGAGCAATGCGAATACGTCGAGTAAGAAGAGGAGGATCGA
GTCTCAAAATGTAACGATAAATCCGGAAGTTCTCGACTGTTACATTTGCTGCGAGCCATTGGCGATTCCGGTTTTCCAGGATAAAATGGAAATGAATGTTGGATTCGATT
CGTCTTCCTTGCTTCTGCGCTTGATCGTATGTCGTGGCCGTATTAATTAA
Protein sequenceShow/hide protein sequence
MATKSKILQSAQREEAEENPPDSESNANTSSKKRRIESQNVTINPEVLDCYICCEPLAIPVFQDKMEMNVGFDSSSLLLRLIVCRGRIN