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MS027631 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027631
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold20:2392814..2393101
RNA-Seq ExpressionMS027631
SyntenyMS027631
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]3.0e-0441.33Show/hide
Query:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRES--LALWLGLREVEIKSDSLKAINL
        +K+N +A++ +    +G L+++   EI A M+D H     L+ EILAIRE   LA  LG+  V ++SDSL+A+NL
Subjt:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRES--LALWLGLREVEIKSDSLKAINL
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]8.1e-1040.21Show/hide
Query:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRE--SLALWLGLREVEIKSDSLKAINLCSGDLDWQGEEATWVEDVKFLA
        +K+N +A++      +G L++    EI   MVD H     L+A+ILAIRE  SLA  LG+  V +++DSL+A+NL      W+GE  +WVED++  A
Subjt:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRE--SLALWLGLREVEIKSDSLKAINLCSGDLDWQGEEATWVEDVKFLA
TrEMBL top hitse value%identityAlignment
A0A6J1DPU1 uncharacterized protein LOC1110224261.4e-0441.33Show/hide
Query:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRES--LALWLGLREVEIKSDSLKAINL
        +K+N +A++ +    +G L+++   EI A M+D H     L+ EILAIRE   LA  LG+  V ++SDSL+A+NL
Subjt:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRES--LALWLGLREVEIKSDSLKAINL
A0A6J1DZK3 uncharacterized protein LOC1110249683.9e-1040.21Show/hide
Query:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRE--SLALWLGLREVEIKSDSLKAINLCSGDLDWQGEEATWVEDVKFLA
        +K+N +A++      +G L++    EI   MVD H     L+A+ILAIRE  SLA  LG+  V +++DSL+A+NL      W+GE  +WVED++  A
Subjt:  MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRE--SLALWLGLREVEIKSDSLKAINLCSGDLDWQGEEATWVEDVKFLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTAACTTTAATGCATCGATTATGAGTAACAGATATGAAATTGGAGCTCTGATTCAAAACTATCGGAACGAGATTCAAGCTACGATGGTCGATTTGCATGCGGC
TGCAAATTCGTTAATGGCCGAAATCCTCGCGATCAGGGAAAGTTTGGCTCTATGGTTAGGGCTGCGGGAAGTGGAGATCAAATCAGATTCTTTGAAGGCCATCAATTTGT
GTTCTGGCGATTTGGATTGGCAGGGAGAAGAAGCCACTTGGGTTGAAGATGTGAAATTTTTGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTAACTTTAATGCATCGATTATGAGTAACAGATATGAAATTGGAGCTCTGATTCAAAACTATCGGAACGAGATTCAAGCTACGATGGTCGATTTGCATGCGGC
TGCAAATTCGTTAATGGCCGAAATCCTCGCGATCAGGGAAAGTTTGGCTCTATGGTTAGGGCTGCGGGAAGTGGAGATCAAATCAGATTCTTTGAAGGCCATCAATTTGT
GTTCTGGCGATTTGGATTGGCAGGGAGAAGAAGCCACTTGGGTTGAAGATGTGAAATTTTTGGCATGA
Protein sequenceShow/hide protein sequence
MKINFNASIMSNRYEIGALIQNYRNEIQATMVDLHAAANSLMAEILAIRESLALWLGLREVEIKSDSLKAINLCSGDLDWQGEEATWVEDVKFLA