; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027660 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027660
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNL-type domain-containing protein
Genome locationscaffold156:594843..596880
RNA-Seq ExpressionMS027660
SyntenyMS027660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9451097.1 hypothetical protein C3L33_17023, partial [Rhododendron williamsianum]1.1e-0448.73Show/hide
Query:  RFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGA--GGFGNGASVGAGTGGACAGVGETCGG
        R GDGA +V+S ES TVGGAGGLGTVGAGAGAG  +           G   G G   G   GAGVGG G GA   G G+G + G G  G  AG G+  GG
Subjt:  RFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGA--GGFGNGASVGAGTGGACAGVGETCGG

Query:  GGNGGGVAGG---GGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAELKGGGVA
        GGNGGG AGG   GG VG  D +   V+    GGG  G ++GAT +     ++ GGVA
Subjt:  GGNGGGVAGG---GGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAELKGGGVA

KAF9674159.1 hypothetical protein SADUNF_Sadunf10G0098600 [Salix dunnii]8.8e-0550Show/hide
Query:  GAGAGDGTSTGAATGAGVGGGGNGAGGFGNGAS-----VGAGTGGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---
        GAGAG+GT+ G   G G+ G G GAGG   GA       GAG G ACAG G+TCGGG  GGGVAGGGG+ GG  G   G +C   GGGT GL+ GAT   
Subjt:  GAGAGDGTSTGAATGAGVGGGGNGAGGFGNGAS-----VGAGTGGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---

Query:  ------TLGGG-AELKGGGVATVGARVDGGGDVVGKLG
                GGG   L G  V  VG  V GG   VG +G
Subjt:  ------TLGGG-AELKGGGVATVGARVDGGGDVVGKLG

KAG1366228.1 hypothetical protein COCNU_13G000180 [Cocos nucifera]2.0e-0449.72Show/hide
Query:  GDGAGAVLSCESTTVG--GAGGLGTVGAGAGAGCFLCLWCLLCLCFP----GAGAG---DGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVG
        G GAG V S  S  VG  GAGGLGTVGAGAGA  FL   CLL LCFP    GAGAG   DG   G     GV GGG   GG G G   G   GG   G G
Subjt:  GDGAGAVLSCESTTVG--GAGGLGTVGAGAGAGCFLCLWCLLCLCFP----GAGAG---DGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVG

Query:  ETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGVATVGARVDGGGDVVGKLGG
        +  GGGG+ GG  G GG+ GG+DG   GV  GG G G      G    GGGA +   +GGGVA  G  V GGG + G   G
Subjt:  ETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGVATVGARVDGGGDVVGKLGG

PNT23998.1 hypothetical protein POPTR_008G110900, partial [Populus trichocarpa]1.4e-0546.15Show/hide
Query:  AVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVGETCGGGGNGGGVAG
        AV S    TVGGAGGLG  GAGAGAG                    G ST A  GAG G  G GAG  G GA VGAG  GA AG G +  G G+GGGVAG
Subjt:  AVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVGETCGGGGNGGGVAG

Query:  GGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL-------------------KGGGVATVGARVDG---GGDVVG
        GGG+ G   G   G +C G GGGT+GLV GA TLG G ++                   +GGGV  VGA V G    GD  G
Subjt:  GGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL-------------------KGGGVATVGARVDG---GGDVVG

TKS15068.1 hypothetical protein D5086_0000037350 [Populus alba]1.8e-0544.79Show/hide
Query:  DYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVG------------AGT
        D   F   A AV S    TVGGAGGLG  GAGA                 GAGAG+GT+ G   G G+ G G GAGG   GA  G            AG 
Subjt:  DYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVG------------AGT

Query:  GGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---------TLGGG-AELKGGGVATVGARVDGGGDVVG
        GG  AG G+TCGGG  GGGVAGGG       GV  G +C   GGGT G+V GAT           GGG   L G  V  VG  V GGG VVG
Subjt:  GGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---------TLGGG-AELKGGGVATVGARVDGGGDVVG

TrEMBL top hitse value%identityAlignment
A0A2K1ZFE8 DNL-type domain-containing protein (Fragment)6.6e-0646.15Show/hide
Query:  AVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVGETCGGGGNGGGVAG
        AV S    TVGGAGGLG  GAGAGAG                    G ST A  GAG G  G GAG  G GA VGAG  GA AG G +  G G+GGGVAG
Subjt:  AVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVGETCGGGGNGGGVAG

Query:  GGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL-------------------KGGGVATVGARVDG---GGDVVG
        GGG+ G   G   G +C G GGGT+GLV GA TLG G ++                   +GGGV  VGA V G    GD  G
Subjt:  GGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL-------------------KGGGVATVGARVDG---GGDVVG

A0A4U5NPX3 Uncharacterized protein3.6e-0445.1Show/hide
Query:  MDYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGC--FLCLWCLLCLCFPGAGAGDGTS------TGAATGAGVGGGGNGAGGFGNGASV-GAGTG-
        M++      AGAV S    TVGGAGGLG  GAGAGAG                GAGAG G +       GA  GAGV G G G  G G GA V GAG G 
Subjt:  MDYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGC--FLCLWCLLCLCFPGAGAGDGTS------TGAATGAGVGGGGNGAGGFGNGASV-GAGTG-

Query:  ------------GACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGV--------ATVGARVDGGG
                    GA AG G+T GGG  GGGVAGGGG+ G   G   G +C G GGGT+GLV GA TLG G ++    GG V          VG    GG 
Subjt:  ------------GACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGV--------ATVGARVDGGG

Query:  DVVG
        +VVG
Subjt:  DVVG

A0A4U5QVH9 Uncharacterized protein8.6e-0644.79Show/hide
Query:  DYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVG------------AGT
        D   F   A AV S    TVGGAGGLG  GAGA                 GAGAG+GT+ G   G G+ G G GAGG   GA  G            AG 
Subjt:  DYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVG------------AGT

Query:  GGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---------TLGGG-AELKGGGVATVGARVDGGGDVVG
        GG  AG G+TCGGG  GGGVAGGG       GV  G +C   GGGT G+V GAT           GGG   L G  V  VG  V GGG VVG
Subjt:  GGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGAT---------TLGGG-AELKGGGVATVGARVDGGGDVVG

A0A5N5LQ22 Uncharacterized protein2.8e-0449.45Show/hide
Query:  TRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTS-TGAATGAGVGG---GGNGAG----GFGNGASV-GAGTGGACA
        T  GDGAG  ++   T   GAG  G  GAGAGAG               AGAG GTS  GA  GAGV G    G GAG    G G G S+ G G G + A
Subjt:  TRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTS-TGAATGAGVGG---GGNGAG----GFGNGASV-GAGTGGACA

Query:  GVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGV-ATVG---ARVDGGGDV
        G G+TCGGG  GGGVAGGGG+ G   G   G +CGG GGGT+GLV GA TLG G ++    GGGV A +G     V+GGG V
Subjt:  GVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAEL---KGGGV-ATVG---ARVDGGGDV

A0A6A4L858 DNL-type domain-containing protein (Fragment)5.6e-0548.73Show/hide
Query:  RFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGA--GGFGNGASVGAGTGGACAGVGETCGG
        R GDGA +V+S ES TVGGAGGLGTVGAGAGAG  +           G   G G   G   GAGVGG G GA   G G+G + G G  G  AG G+  GG
Subjt:  RFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWCLLCLCFPGAGAGDGTSTGAATGAGVGGGGNGA--GGFGNGASVGAGTGGACAGVGETCGG

Query:  GGNGGGVAGG---GGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAELKGGGVA
        GGNGGG AGG   GG VG  D +   V+    GGG  G ++GAT +     ++ GGVA
Subjt:  GGNGGGVAGG---GGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGAELKGGGVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGCAGTATGAGCGATAGGCTTCAGGGGCGTGCAGCATGGGCATGGCGTGAGAGGTTGCAGGAGTGCCAGAAATTGAGGCTTGTGGTAGCAACCAGAATA
ATGAATCCCAATACAACTCTCGTCCATGTTCTCACCTTGCCTTCCATTGGGTCTCCTCCATTCTGCGGCGTTGAATTGATGGACTATACCAGATTTGGTGATGGG
GCCGGAGCTGTACTATCCTGTGAATCCACAACTGTAGGTGGTGCCGGTGGACTTGGCACGGTTGGGGCCGGGGCCGGGGCTGGATGTTTTTTATGTTTGTGGTGC
CTCTTGTGCCTATGCTTTCCCGGAGCCGGTGCAGGCGACGGGACTAGCACCGGTGCCGCAACTGGTGCTGGCGTTGGCGGTGGAGGCAATGGTGCTGGTGGATTC
GGCAATGGCGCTAGTGTGGGAGCAGGCACCGGCGGTGCCTGTGCCGGAGTTGGAGAGACCTGTGGAGGAGGTGGCAATGGCGGAGGAGTAGCTGGTGGAGGTGGC
AATGTCGGAGGTAGCGATGGAGTCGAGACGGGCGTAATTTGCGGTGGTTGGGGTGGTGGGACCGTCGGGCTTGTAGATGGTGCAACAACATTAGGGGGTGGTGCC
GAGCTCAAGGGTGGCGGAGTGGCTACAGTTGGTGCTAGAGTCGATGGCGGTGGCGATGTGGTCGGCAAGCTCGGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGCAGTATGAGCGATAGGCTTCAGGGGCGTGCAGCATGGGCATGGCGTGAGAGGTTGCAGGAGTGCCAGAAATTGAGGCTTGTGGTAGCAACCAGAATA
ATGAATCCCAATACAACTCTCGTCCATGTTCTCACCTTGCCTTCCATTGGGTCTCCTCCATTCTGCGGCGTTGAATTGATGGACTATACCAGATTTGGTGATGGG
GCCGGAGCTGTACTATCCTGTGAATCCACAACTGTAGGTGGTGCCGGTGGACTTGGCACGGTTGGGGCCGGGGCCGGGGCTGGATGTTTTTTATGTTTGTGGTGC
CTCTTGTGCCTATGCTTTCCCGGAGCCGGTGCAGGCGACGGGACTAGCACCGGTGCCGCAACTGGTGCTGGCGTTGGCGGTGGAGGCAATGGTGCTGGTGGATTC
GGCAATGGCGCTAGTGTGGGAGCAGGCACCGGCGGTGCCTGTGCCGGAGTTGGAGAGACCTGTGGAGGAGGTGGCAATGGCGGAGGAGTAGCTGGTGGAGGTGGC
AATGTCGGAGGTAGCGATGGAGTCGAGACGGGCGTAATTTGCGGTGGTTGGGGTGGTGGGACCGTCGGGCTTGTAGATGGTGCAACAACATTAGGGGGTGGTGCC
GAGCTCAAGGGTGGCGGAGTGGCTACAGTTGGTGCTAGAGTCGATGGCGGTGGCGATGTGGTCGGCAAGCTCGGTGGCTGA
Protein sequenceShow/hide protein sequence
MAGSMSDRLQGRAAWAWRERLQECQKLRLVVATRIMNPNTTLVHVLTLPSIGSPPFCGVELMDYTRFGDGAGAVLSCESTTVGGAGGLGTVGAGAGAGCFLCLWC
LLCLCFPGAGAGDGTSTGAATGAGVGGGGNGAGGFGNGASVGAGTGGACAGVGETCGGGGNGGGVAGGGGNVGGSDGVETGVICGGWGGGTVGLVDGATTLGGGA
ELKGGGVATVGARVDGGGDVVGKLGG