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MS027661 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027661
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLeucine-rich repeat (LRR) family protein
Genome locationscaffold156:641939..642379
RNA-Seq ExpressionMS027661
SyntenyMS027661
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIL75689.1 hypothetical protein Vretifemale_5441 [Volvox reticuliferus]6.0e-0449.17Show/hide
Query:  SLPVASPLPLMATAPPLSPPSPKVFVAPPPSPTSLPPPQSPPTPPVSIAPQ---PSALSPPPPSLPQSPPVTVSQPPASLPPPPQSP--PVSPPPPAASP
        S P + P P+ +  PP  PP P    +PPPSPT  PPP SPP+PP    PQ   P   SPPPPS P  PP + S PP+  PPPP SP  P SP PP + P
Subjt:  SLPVASPLPLMATAPPLSPPSPKVFVAPPPSPTSLPPPQSPPTPPVSIAPQ---PSALSPPPPSLPQSPPVTVSQPPASLPPPPQSP--PVSPPPPAASP

Query:  LSNTTQPAPLSPPPPAASPS
            + P P  PPPP  SPS
Subjt:  LSNTTQPAPLSPPPPAASPS
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein2.9e-0444.36Show/hide
Query:  PTVALSLPVASPLPLMATAPPLSPPSPKVFVAPPPSPTSLPPP-QSPPTPPVSIAPQPSALSPPPPSLPQSPPVTVSQPPASLPPP------PQSPPV--
        P    S P  SP P + + PP  PP P V+  PPP P   PPP  SPP PP    P P   SPPPPS P  PP   S PP   PPP      P  PPV  
Subjt:  PTVALSLPVASPLPLMATAPPLSPPSPKVFVAPPPSPTSLPPP-QSPPTPPVSIAPQPSALSPPPPSLPQSPPVTVSQPPASLPPP------PQSPPV--

Query:  -SPPPPAASP----LSNTTQPAPLSPPPPAASP
          PPPP+ +P     +    P P SPPPP  SP
Subjt:  -SPPPPAASP----LSNTTQPAPLSPPPPAASP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGTATCATGGATAATTTTTGTAACTTGGCTCACCTTTGTAGTATCCCTCACCAACGGCCAAGCTCCCACGGTGGCACTGAGCTTGCCCGTCGCATCG
CCACTGCCACTGATGGCTACTGCCCCTCCTTTGTCTCCGCCATCACCTAAAGTTTTTGTTGCACCACCACCATCTCCAACAAGTTTACCTCCGCCTCAGTCGCCA
CCAACTCCGCCTGTCTCAATCGCCCCACAACCATCAGCATTGTCTCCACCACCACCGTCGCTACCGCAAAGTCCACCTGTGACTGTCTCACAGCCACCAGCATCT
TTACCACCCCCGCCACAAAGTCCACCAGTTTCACCGCCACCGCCAGCTGCTTCACCTCTCTCAAACACGACACAGCCAGCACCATTGTCACCGCCCCCGCCAGCT
GCTTCACCTTCTTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGTATCATGGATAATTTTTGTAACTTGGCTCACCTTTGTAGTATCCCTCACCAACGGCCAAGCTCCCACGGTGGCACTGAGCTTGCCCGTCGCATCG
CCACTGCCACTGATGGCTACTGCCCCTCCTTTGTCTCCGCCATCACCTAAAGTTTTTGTTGCACCACCACCATCTCCAACAAGTTTACCTCCGCCTCAGTCGCCA
CCAACTCCGCCTGTCTCAATCGCCCCACAACCATCAGCATTGTCTCCACCACCACCGTCGCTACCGCAAAGTCCACCTGTGACTGTCTCACAGCCACCAGCATCT
TTACCACCCCCGCCACAAAGTCCACCAGTTTCACCGCCACCGCCAGCTGCTTCACCTCTCTCAAACACGACACAGCCAGCACCATTGTCACCGCCCCCGCCAGCT
GCTTCACCTTCTTCAAATTAA
Protein sequenceShow/hide protein sequence
MASVSWIIFVTWLTFVVSLTNGQAPTVALSLPVASPLPLMATAPPLSPPSPKVFVAPPPSPTSLPPPQSPPTPPVSIAPQPSALSPPPPSLPQSPPVTVSQPPAS
LPPPPQSPPVSPPPPAASPLSNTTQPAPLSPPPPAASPSSN