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MS027811 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027811
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNop domain-containing protein
Genome locationscaffold22:687812..689698
RNA-Seq ExpressionMS027811
SyntenyMS027811
Gene Ontology termsNA
InterPro domainsIPR036070 - Nop domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RRT76887.1 hypothetical protein B296_00019156 [Ensete ventricosum]2.9e-0536.07Show/hide
Query:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL
        VRNS+ DL RFG      AFH F   ++ + N C+   E                    F +T +   S+EF++  +  + LS    ++ +   QR+++L
Subjt:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL

Query:  SQYRKKLYGYLVAKMNDIAPNL
        S+YRK LY YLV KMNDIAPNL
Subjt:  SQYRKKLYGYLVAKMNDIAPNL

RWW34033.1 hypothetical protein GW17_00001223 [Ensete ventricosum]2.9e-0536.07Show/hide
Query:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL
        VRNS+ DL RFG      AFH F   ++ + N C+   E                    F +T +   S+EF++  +  + LS    ++ +   QR+++L
Subjt:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL

Query:  SQYRKKLYGYLVAKMNDIAPNL
        S+YRK LY YLV KMNDIAPNL
Subjt:  SQYRKKLYGYLVAKMNDIAPNL

XP_010534767.1 PREDICTED: nucleolar protein 56 [Tarenaya hassleriana]7.1e-0489.29Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLS+YRKKLY YLVAKMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

XP_010543116.1 PREDICTED: nucleolar protein 56-like [Tarenaya hassleriana]7.1e-0489.29Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLS+YRKKLY YLVAKMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

XP_038880087.1 nucleolar protein 56-like [Benincasa hispida]7.1e-0489.29Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLS+YRKKLY YLVAKMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

TrEMBL top hitse value%identityAlignment
A0A427AKU3 Nop domain-containing protein1.4e-0536.07Show/hide
Query:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL
        VRNS+ DL RFG      AFH F   ++ + N C+   E                    F +T +   S+EF++  +  + LS    ++ +   QR+++L
Subjt:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL

Query:  SQYRKKLYGYLVAKMNDIAPNL
        S+YRK LY YLV KMNDIAPNL
Subjt:  SQYRKKLYGYLVAKMNDIAPNL

A0A444GGN6 Nop domain-containing protein1.4e-0536.07Show/hide
Query:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL
        VRNS+ DL RFG      AFH F   ++ + N C+   E                    F +T +   S+EF++  +  + LS    ++ +   QR+++L
Subjt:  VRNSISDLYRFG-----TAFHSFDRLSVPSTNSCSVRCE--------------------FTMTGLLSVSSEFLISFVMVEFLS--SGLDKRSTDQRLMDL

Query:  SQYRKKLYGYLVAKMNDIAPNL
        S+YRK LY YLV KMNDIAPNL
Subjt:  SQYRKKLYGYLVAKMNDIAPNL

A0A444Z102 Nop domain-containing protein7.6e-0485.71Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLS+YR+KLY YLVAKMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

A0A5B6ZQB7 Putative nucleolar protein 56-like4.5e-0489.29Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLSQYRKKLY YLV KMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

A0A5J5BM21 Nop domain-containing protein4.5e-0489.29Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDLSQYRKKLY YLV KMNDIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56110.1 homolog of nucleolar protein NOP566.2e-0675Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        Q++MDL+ YRKKLY YLV KM+DIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL

AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein2.8e-0678.57Show/hide
Query:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL
        QR+MDL+ YRKKLY YLV KM+DIAPNL
Subjt:  QRLMDLSQYRKKLYGYLVAKMNDIAPNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCACTGTATCTTCTATTTTGTGGTGTACGAAATTCAATCTCCGATTTGTACCGTTTCGGAACTGCCTTCCATTCTTTTGATCGGCTCTCGGTGCCCTCAACCAA
TTCATGCTCTGTCCGATGTGAGTTCACCATGACTGGGTTGCTATCGGTTTCATCTGAATTCCTGATTTCATTTGTAATGGTAGAATTTCTCTCCAGTGGACTTGATAAAC
GTTCAACAGATCAAAGACTGATGGATCTGTCTCAGTACAGGAAGAAGCTGTATGGCTACCTGGTTGCTAAAATGAATGATATTGCACCCAATTTGGTGCTGAGAAGGGCC
AGAAGGCTCTCTTCAGGAGTTCTACTCGAATTCATCCTATCTCTTGTGGGTTTTGCTAATACAGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCACTGTATCTTCTATTTTGTGGTGTACGAAATTCAATCTCCGATTTGTACCGTTTCGGAACTGCCTTCCATTCTTTTGATCGGCTCTCGGTGCCCTCAACCAA
TTCATGCTCTGTCCGATGTGAGTTCACCATGACTGGGTTGCTATCGGTTTCATCTGAATTCCTGATTTCATTTGTAATGGTAGAATTTCTCTCCAGTGGACTTGATAAAC
GTTCAACAGATCAAAGACTGATGGATCTGTCTCAGTACAGGAAGAAGCTGTATGGCTACCTGGTTGCTAAAATGAATGATATTGCACCCAATTTGGTGCTGAGAAGGGCC
AGAAGGCTCTCTTCAGGAGTTCTACTCGAATTCATCCTATCTCTTGTGGGTTTTGCTAATACAGCCTGA
Protein sequenceShow/hide protein sequence
MESLYLLFCGVRNSISDLYRFGTAFHSFDRLSVPSTNSCSVRCEFTMTGLLSVSSEFLISFVMVEFLSSGLDKRSTDQRLMDLSQYRKKLYGYLVAKMNDIAPNLVLRRA
RRLSSGVLLEFILSLVGFANTA