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MS027818 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027818
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold22:993453..993827
RNA-Seq ExpressionMS027818
SyntenyMS027818
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.8e-0744.78Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD
        GIGW++ D  GE+VL GN  +RE+K I  LE + I+ GL+ I+ +    IYLE+DS+E+ +L+   D
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-0837.96Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLN----NTDALLMKLNPSWWKIDGL---CVNFIRREAN
        GIGW++RD  GEV+      +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    +   ++  L   W  +  +    +  I REAN
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLN----NTDALLMKLNPSWWKIDGL---CVNFIRREAN

Query:  SLAHMVAR
         +AH +AR
Subjt:  SLAHMVAR

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]6.4e-0745.21Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL
        GIGW++RD  GEV+  G   +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    + +KL
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]6.4e-0745.21Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL
        GIGW++RD  GEV+  G   +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    + +KL
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.4e-0937.93Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNED-HKEIYLETDSLEMEKLLNNTDALLMKLNPSWWKIDG----------LCVNFIR
        GIGW+IR W G++VL GN  V     +K LEA AILEGLR+++N    + +++ETDS E+E LLN     L K   + W ++           L    + 
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNED-HKEIYLETDSLEMEKLLNNTDALLMKLNPSWWKIDG----------LCVNFIR

Query:  REANSLAHMVARTSAM
        RE N  AH +A+ +++
Subjt:  REANSLAHMVARTSAM

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.4e-0937.96Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLN----NTDALLMKLNPSWWKIDGL---CVNFIRREAN
        GIGW++RD  GEV+      +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    +   ++  L   W  +  +    +  I REAN
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLN----NTDALLMKLNPSWWKIDGL---CVNFIRREAN

Query:  SLAHMVAR
         +AH +AR
Subjt:  SLAHMVAR

A0A6J1CQG0 uncharacterized protein LOC1110132161.8e-0744.78Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD
        GIGW++ D  GE+VL GN  +RE+K I  LE + I+ GL+ I+ +    IYLE+DS+E+ +L+   D
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.1e-0745.21Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL
        GIGW++RD  GEV+  G   +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    + +KL
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-0937.93Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNED-HKEIYLETDSLEMEKLLNNTDALLMKLNPSWWKIDG----------LCVNFIR
        GIGW+IR W G++VL GN  V     +K LEA AILEGLR+++N    + +++ETDS E+E LLN     L K   + W ++           L    + 
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNED-HKEIYLETDSLEMEKLLNNTDALLMKLNPSWWKIDG----------LCVNFIR

Query:  REANSLAHMVARTSAM
        RE N  AH +A+ +++
Subjt:  REANSLAHMVARTSAM

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.1e-0745.21Show/hide
Query:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL
        GIGW++RD  GEV+  G   +R ++ I +LE +AI EGLR+I  E  + I+LE+DSLE   LL+    + +KL
Subjt:  GIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47497.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0427.27Show/hide
Query:  PRGIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKLN-----PSWWKIDGLC-VNFIRREA
        P   GWVIRD  G+ V  G A+          E  A+L  ++S  +  H++I+ E D+ E+ ++LN   +     N      +W +    C   +I R+ 
Subjt:  PRGIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKLN-----PSWWKIDGLC-VNFIRREA

Query:  NSLAHMVART
        N  A ++A++
Subjt:  NSLAHMVART

AT1G47497.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0427.27Show/hide
Query:  PRGIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKLN-----PSWWKIDGLC-VNFIRREA
        P   GWVIRD  G+ V  G A+          E  A+L  ++S  +  H++I+ E D+ E+ ++LN   +     N      +W +    C   +I R+ 
Subjt:  PRGIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKLN-----PSWWKIDGLC-VNFIRREA

Query:  NSLAHMVART
        N  A ++A++
Subjt:  NSLAHMVART

AT2G02650.1 Ribonuclease H-like superfamily protein6.2e-0830.77Show/hide
Query:  GWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD------ALLMKLNPSWWKIDGLCVNFIRREANSLA
        GW IR+  G +VL GNA ++   C    EAL  L  L+ I     + ++ E+DS  +  L+NN +       L+  +     K+    + F+ RE NS A
Subjt:  GWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTD------ALLMKLNPSWWKIDGLCVNFIRREANSLA

Query:  HMVA
          +A
Subjt:  HMVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCCCCTCGTGGGATTGGATGGGTGATTCGAGATTGGGTTGGAGAAGTTGTCCTCGTCGGCAATGCCTCTGTTAGGGAACAGAAATGCATCAAGTTCTTAGAAGC
CTTGGCGATTTTGGAGGGATTAAGAAGCATCAGTAATGAAGACCATAAAGAGATTTACCTGGAGACAGATTCGTTGGAGATGGAGAAGTTGTTGAACAACACCGACGCAT
TGTTGATGAAATTAAATCCCTCATGGTGGAAAATCGATGGTCTCTGCGTCAATTTCATCAGAAGGGAAGCAAATTCTTTGGCTCACATGGTTGCTCGGACTTCGGCAATG
GGGTTTCTGTTTGGCGTGGGATTACCCAACTTCCTAGGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCCCCTCGTGGGATTGGATGGGTGATTCGAGATTGGGTTGGAGAAGTTGTCCTCGTCGGCAATGCCTCTGTTAGGGAACAGAAATGCATCAAGTTCTTAGAAGC
CTTGGCGATTTTGGAGGGATTAAGAAGCATCAGTAATGAAGACCATAAAGAGATTTACCTGGAGACAGATTCGTTGGAGATGGAGAAGTTGTTGAACAACACCGACGCAT
TGTTGATGAAATTAAATCCCTCATGGTGGAAAATCGATGGTCTCTGCGTCAATTTCATCAGAAGGGAAGCAAATTCTTTGGCTCACATGGTTGCTCGGACTTCGGCAATG
GGGTTTCTGTTTGGCGTGGGATTACCCAACTTCCTAGGTGGTTGA
Protein sequenceShow/hide protein sequence
MVPPRGIGWVIRDWVGEVVLVGNASVREQKCIKFLEALAILEGLRSISNEDHKEIYLETDSLEMEKLLNNTDALLMKLNPSWWKIDGLCVNFIRREANSLAHMVARTSAM
GFLFGVGLPNFLGG