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MS027853 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027853
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRAB GTPase homolog A4D
Genome locationscaffold735:366297..367807
RNA-Seq ExpressionMS027853
SyntenyMS027853
Gene Ontology termsGO:0080092 - regulation of pollen tube growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0045177 - apical part of cell (cellular component)
GO:0070382 - exocytic vesicle (cellular component)
GO:0090404 - pollen tube tip (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0019900 - kinase binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR005225 - Small GTP-binding protein domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2631400.1 ras-related protein RABA4d [Pyrus ussuriensis x Pyrus communis]1.5e-3297.37Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSLDSKATIGVEFQTKTLV+DQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

XP_004150166.1 ras-related protein RABA4d [Cucumis sativus]8.7e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

XP_008460801.1 PREDICTED: ras-related protein RABA4d [Cucumis melo]8.7e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

XP_022151622.1 ras-related protein RABA4d-like [Momordica charantia]3.9e-33100Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

XP_038881448.1 ras-related protein RABA4d [Benincasa hispida]8.7e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

TrEMBL top hitse value%identityAlignment
A0A0A0KW90 Uncharacterized protein4.2e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

A0A1S3CDP9 ras-related protein RABA4d4.2e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

A0A5A7UD85 Ras-related protein RABA4d4.2e-3398.68Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

A0A5N5I156 Ras-related protein RABA4d7.2e-3397.37Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSLDSKATIGVEFQTKTLV+DQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

A0A6J1DE05 ras-related protein RABA4d-like1.9e-33100Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

SwissProt top hitse value%identityAlignment
Q40191 Ras-related protein Rab11A9.4e-3088.89Show/hide
Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFSLDSK+TIGVEFQT+TLVID KTVKAQIWDTAGQER
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

Q40520 Ras-related protein Rab11C7.2e-3085.53Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFSLDSKATIGVEFQT+TLVI  K+VKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

Q40522 Ras-related protein Rab11D6.1e-2982.89Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFSLDSKATIGVEFQT+TL I  K+VKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

Q9FE79 Ras-related protein RABA4c2.1e-2982.89Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

Q9LH50 Ras-related protein RABA4d9.7e-3596.05Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFS+DSKATIGVEFQTKTLVID KTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

Arabidopsis top hitse value%identityAlignment
AT1G01200.1 RAB GTPase homolog A36.0e-2457.14Show/hide
Query:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERKPRRFWSWKRISLFGRVMNKLLQQMVVERLA
        +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIWDTAGQER      ++ R +L   V+  + +++  + +A
Subjt:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERKPRRFWSWKRISLFGRVMNKLLQQMVVERLA

AT3G12160.1 RAB GTPase homolog A4D6.9e-3696.05Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFS+DSKATIGVEFQTKTLVID KTVKAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

AT4G39990.1 RAB GTPase homolog A4B6.9e-2880.56Show/hide
Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++KAQIWDTAGQER
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

AT5G47960.1 RAB GTPase homolog A4C1.5e-3082.89Show/hide
Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQER
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER

AT5G65270.1 RAB GTPase homolog A4A7.3e-3086.11Show/hide
Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER
        YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFSLDSKATIGVEFQT+TLVID K+VKAQIWDTAGQER
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATCTGTATGGGGATTACAATCAGAAGATTGATTACGTCTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCGCGATTTTCCCG
GAATGAATTTAGCCTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGACACTGCTGGAC
AAGAAAGGAAGCCTAGAAGATTCTGGAGTTGGAAAAGAATATCATTGTTTGGTCGTGTGATGAATAAATTGCTACAGCAAATGGTGGTGGAACGATTGGCAACGGTTAGA
GACATTCTTGATAAGGGGAAGGCAATTGTTGAACAGTGGAATGAAGGAGAGGCTTATGAGACGGTGCAGAGGAAGTCAAGACTGAATGAACTAATCTCAAGAAGACTTGA
GATGCCTCAATTCAATCCAGTTGATCTGGATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATCTGTATGGGGATTACAATCAGAAGATTGATTACGTCTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCGCGATTTTCCCG
GAATGAATTTAGCCTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGACACTGCTGGAC
AAGAAAGGAAGCCTAGAAGATTCTGGAGTTGGAAAAGAATATCATTGTTTGGTCGTGTGATGAATAAATTGCTACAGCAAATGGTGGTGGAACGATTGGCAACGGTTAGA
GACATTCTTGATAAGGGGAAGGCAATTGTTGAACAGTGGAATGAAGGAGAGGCTTATGAGACGGTGCAGAGGAAGTCAAGACTGAATGAACTAATCTCAAGAAGACTTGA
GATGCCTCAATTCAATCCAGTTGATCTGGATGGATAG
Protein sequenceShow/hide protein sequence
MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERKPRRFWSWKRISLFGRVMNKLLQQMVVERLATVR
DILDKGKAIVEQWNEGEAYETVQRKSRLNELISRRLEMPQFNPVDLDG