; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS027890 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027890
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold211:169040..169375
RNA-Seq ExpressionMS027890
SyntenyMS027890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043403.1 hypothetical protein E6C27_scaffold1639G00020 [Cucumis melo var. makuwa]3.5e-0436.11Show/hide
Query:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI
        S   QL SI K  QL +  S+ EEAL    ++  +   IQ+  ++  LE +ELK +L++ NA++++LS L  EK E + +Q LE+ KL+ E+  +E T  
Subjt:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI

Query:  ISDANIKS
        I++  I++
Subjt:  ISDANIKS

KAA0048377.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-0434.91Show/hide
Query:  FTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMIIS
        F +L S  K  QL +  S+ +EAL    ++ E+   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KL  E+  +E+T  I+
Subjt:  FTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMIIS

Query:  DANIKS
        +  I++
Subjt:  DANIKS

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]9.2e-0537.96Show/hide
Query:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI
        S   QL S  K  QL +  S+ EEAL    ++ E+ N IQ+  +Q  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KL+ E+  +E T  
Subjt:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI

Query:  ISDANIKS
        I++  I++
Subjt:  ISDANIKS

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]2.0e-0437.27Show/hide
Query:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT
        SHS  TQL S+ K  QL +  S+ +EAL    ++  +   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KLR E+  +E+T
Subjt:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT

Query:  MIISDANIKS
          I++  I++
Subjt:  MIISDANIKS

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]2.0e-0437.27Show/hide
Query:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT
        SHS  TQL S+ K  QL +  S+ +EAL    ++  +   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KLR E+  +E+T
Subjt:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT

Query:  MIISDANIKS
          I++  I++
Subjt:  MIISDANIKS

TrEMBL top hitse value%identityAlignment
A0A5A7TJ15 Uncharacterized protein1.7e-0436.11Show/hide
Query:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI
        S   QL SI K  QL +  S+ EEAL    ++  +   IQ+  ++  LE +ELK +L++ NA++++LS L  EK E + +Q LE+ KL+ E+  +E T  
Subjt:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI

Query:  ISDANIKS
        I++  I++
Subjt:  ISDANIKS

A0A5A7U2A6 Retrotransposon protein1.7e-0434.91Show/hide
Query:  FTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMIIS
        F +L S  K  QL +  S+ +EAL    ++ E+   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KL  E+  +E+T  I+
Subjt:  FTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMIIS

Query:  DANIKS
        +  I++
Subjt:  DANIKS

A0A5A7V3X5 PMD domain-containing protein4.5e-0537.96Show/hide
Query:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI
        S   QL S  K  QL +  S+ EEAL    ++ E+ N IQ+  +Q  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KL+ E+  +E T  
Subjt:  SIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMI

Query:  ISDANIKS
        I++  I++
Subjt:  ISDANIKS

A0A5A7V4F4 PMD domain-containing protein9.9e-0537.27Show/hide
Query:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT
        SHS  TQL S+ K  QL +  S+ +EAL    ++  +   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KLR E+  +E+T
Subjt:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT

Query:  MIISDANIKS
          I++  I++
Subjt:  MIISDANIKS

A0A5D3BRA8 PMD domain-containing protein9.9e-0537.27Show/hide
Query:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT
        SHS  TQL S+ K  QL +  S+ +EAL    ++  +   IQ+   +  LE +EL+ +L++ NA++E+LS L  EK E + +Q LE++KLR E+  +E+T
Subjt:  SHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENT

Query:  MIISDANIKS
          I++  I++
Subjt:  MIISDANIKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCACTCAATTTTCACGCAGCTATCTTCAATAAGTAAGGATGACCAATTGAAACAAATGAAATCTAGTTTTGAGGAGGCACTACTAAGAGAAATTGAAATACTTGA
GGAGAAGAATGCGATTCAACAACTACGAGTACAATCACTTCTAGAGGCGGAAGAATTAAAGATCAAGCTCAAAACTGCAAATGCTAAAACCGAGAGGCTTTCTAATTTAA
TCTTTGAGAAAAATGAGGACTTGAAACGACAAAGACTCGAGATTTCAAAATTGCGTAAGGAGATATACAATATTGAGAATACTATGATTATCAGTGATGCAAACATCAAG
TCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCACTCAATTTTCACGCAGCTATCTTCAATAAGTAAGGATGACCAATTGAAACAAATGAAATCTAGTTTTGAGGAGGCACTACTAAGAGAAATTGAAATACTTGA
GGAGAAGAATGCGATTCAACAACTACGAGTACAATCACTTCTAGAGGCGGAAGAATTAAAGATCAAGCTCAAAACTGCAAATGCTAAAACCGAGAGGCTTTCTAATTTAA
TCTTTGAGAAAAATGAGGACTTGAAACGACAAAGACTCGAGATTTCAAAATTGCGTAAGGAGATATACAATATTGAGAATACTATGATTATCAGTGATGCAAACATCAAG
TCTTGA
Protein sequenceShow/hide protein sequence
MSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKIKLKTANAKTERLSNLIFEKNEDLKRQRLEISKLRKEIYNIENTMIISDANIK
S