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MS027931 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027931
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationscaffold375:1472796..1473089
RNA-Seq ExpressionMS027931
SyntenyMS027931
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605034.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]5.0e-3980.41Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRL ++VNA+Q+L+LSSLTT+HGSS +RKGYCAVYVG+SQKKRF+IPVAYLNEP F+DLL+Q EEE+GY+HPMGGLTIPCSD TFI LISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

KGN61865.1 hypothetical protein Csa_006212 [Cucumis sativus]9.1e-4181.44Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGR+VN +Q+++LSSLTT+HGSS +RKGYCAVYVGE+QKKRFVIP+AYLNEP F+DLLSQ  EE+GYNHPMGGLTIPCS+DTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

XP_008457943.1 PREDICTED: auxin-responsive protein SAUR21-like [Cucumis melo]3.7e-4284.54Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGR+VNAVQ+++LSSLTT+HGSS +RKGYCAVYVGESQKKRFVIP+AYLN+P F+DLLSQ  EE+GYNHPMGGLTIPCSDDTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

XP_022146118.1 auxin-responsive protein SAUR24-like [Momordica charantia]7.7e-4898.97Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGRIVNAVQSLKLSSLTTNHGSSGVR+GYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

XP_038902470.1 auxin-induced protein 15A-like [Benincasa hispida]9.7e-4386.6Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRL R+VNAVQ+++LSSLTT+HGSS +RKGYCAVYVGESQKKRFVIPVAYLNEP F+DLLSQ EEE+GYNHPMGGLTIPCSDDTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

TrEMBL top hitse value%identityAlignment
A0A0A0LIY4 SAUR family protein4.4e-4181.44Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGR+VN +Q+++LSSLTT+HGSS +RKGYCAVYVGE+QKKRFVIP+AYLNEP F+DLLSQ  EE+GYNHPMGGLTIPCS+DTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

A0A1S3C683 auxin-responsive protein SAUR21-like1.8e-4284.54Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGR+VNAVQ+++LSSLTT+HGSS +RKGYCAVYVGESQKKRFVIP+AYLN+P F+DLLSQ  EE+GYNHPMGGLTIPCSDDTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

A0A5D3BN78 Auxin-responsive protein SAUR21-like1.8e-4284.54Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGR+VNAVQ+++LSSLTT+HGSS +RKGYCAVYVGESQKKRFVIP+AYLN+P F+DLLSQ  EE+GYNHPMGGLTIPCSDDTF+DLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

A0A6J1CXQ4 auxin-responsive protein SAUR24-like3.7e-4898.97Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        MGFRLGRIVNAVQSLKLSSLTTNHGSSGVR+GYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

A0A6J1CYP6 auxin-responsive protein SAUR21-like7.3e-3676.04Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNE
        MGFRL +IVNAVQ+L LSSLT  HGSS +RKG  A+YVGES++ RFVIP+AYL+ P F+DLLSQAEEE+GY+HPMGGLTIPC+DDTFIDL+SRLNE
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNE

SwissProt top hitse value%identityAlignment
P33079 Auxin-induced protein 10A52.0e-2255.1Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSS--GVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNE
        MGFR+  IV      + S  TT   S    V KGY AVYVG+ + +RF IPV+YLNEP F++LLSQAEEE+GY+HPMGGLTIPC ++ F+++ + LNE
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSS--GVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNE

P33083 Auxin-induced protein 6B3.4e-2257.14Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSS---GVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN
        MGFRL         ++ +S + N  SS    V KGY AVYVGE + +RFVIPV+YLN+P F+DLLSQAEEE+GY+HP GGLTIPCS+D F  + S LN
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSS---GVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN

Q9FJF6 Auxin-responsive protein SAUR234.4e-2254.02Show/hide
Query:  VQSLKLSSLTTNHGSSGVR---KGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN
        V+SL ++    +  ++ V    KG+ AVYVGESQKKR+++P++YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SRL+
Subjt:  VQSLKLSSLTTNHGSSGVR---KGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN

Q9FJG0 Auxin-responsive protein SAUR204.4e-2261.04Show/hide
Query:  LSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISR
        LS  TT   +S   KG+ AVYVGESQKKR+++P++YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SR
Subjt:  LSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISR

Q9FK62 Auxin-responsive protein SAUR244.0e-2362.03Show/hide
Query:  KLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRL
        K+ S +T  GS+   KG+ AVYVGESQKKR+++PV+YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SRL
Subjt:  KLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRL

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.1e-2352.04Show/hide
Query:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGE-SQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES
        M  R+ R++ + + L L SL+ +  +  + KG+ AVYVGE  QK+RFV+PV YL+ P F+ LL +AEEE+G++HPMGGLTIPC++  FIDL SRL+ S
Subjt:  MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGE-SQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES

AT4G38840.1 SAUR-like auxin-responsive protein family8.8e-2653.54Show/hide
Query:  MGFRLGRIVNA----VQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN
        M  R+ R++ +    ++  KL S +++  S  V KGY AVYVGE   KRFV+PV+YL++P F+DLL +AEEE+G++HPMGGLTIPCS++ FIDL SR N
Subjt:  MGFRLGRIVNA----VQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN

AT5G18020.1 SAUR-like auxin-responsive protein family3.1e-2361.04Show/hide
Query:  LSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISR
        LS  TT   +S   KG+ AVYVGESQKKR+++P++YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SR
Subjt:  LSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISR

AT5G18060.1 SAUR-like auxin-responsive protein family3.1e-2354.02Show/hide
Query:  VQSLKLSSLTTNHGSSGVR---KGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN
        V+SL ++    +  ++ V    KG+ AVYVGESQKKR+++P++YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SRL+
Subjt:  VQSLKLSSLTTNHGSSGVR---KGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLN

AT5G18080.1 SAUR-like auxin-responsive protein family2.8e-2462.03Show/hide
Query:  KLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRL
        K+ S +T  GS+   KG+ AVYVGESQKKR+++PV+YLN+P F+ LLS++EEE+G++HPMGGLTIPC +DTFI++ SRL
Subjt:  KLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTCGCTTGGGGAGAATTGTAAATGCTGTGCAAAGTCTTAAACTTTCTTCTCTAACAACAAACCATGGATCTTCAGGAGTCCGCAAAGGTTATTGTGCAGTCTA
TGTAGGGGAAAGCCAAAAGAAGCGGTTTGTGATTCCAGTTGCTTACTTGAATGAGCCCATTTTCAGAGACTTGCTAAGTCAGGCTGAAGAAGAATATGGTTATAATCATC
CTATGGGAGGCCTCACTATTCCCTGCAGTGATGATACATTCATTGATCTCATCTCTCGTTTGAATGAGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTCGCTTGGGGAGAATTGTAAATGCTGTGCAAAGTCTTAAACTTTCTTCTCTAACAACAAACCATGGATCTTCAGGAGTCCGCAAAGGTTATTGTGCAGTCTA
TGTAGGGGAAAGCCAAAAGAAGCGGTTTGTGATTCCAGTTGCTTACTTGAATGAGCCCATTTTCAGAGACTTGCTAAGTCAGGCTGAAGAAGAATATGGTTATAATCATC
CTATGGGAGGCCTCACTATTCCCTGCAGTGATGATACATTCATTGATCTCATCTCTCGTTTGAATGAGTCATGA
Protein sequenceShow/hide protein sequence
MGFRLGRIVNAVQSLKLSSLTTNHGSSGVRKGYCAVYVGESQKKRFVIPVAYLNEPIFRDLLSQAEEEYGYNHPMGGLTIPCSDDTFIDLISRLNES