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MS027942 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027942
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationscaffold375:1521306..1521599
RNA-Seq ExpressionMS027942
SyntenyMS027942
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146170.1 auxin-responsive protein SAUR21-like [Momordica charantia]2.2e-47100Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022944365.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]3.6e-4594.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIR LSLVPHAKQILKMQS FTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022944366.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]7.9e-4593.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIR LSLVPHAKQILKMQS FTKNQ+DVPK HVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022947574.1 auxin-responsive protein SAUR21-like [Cucurbita moschata]1.2e-4594.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022947577.1 auxin-responsive protein SAUR21-like [Cucurbita moschata]3.6e-4593.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQ+LL HAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

TrEMBL top hitse value%identityAlignment
A0A6J1CWI9 auxin-responsive protein SAUR21-like1.1e-47100Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1FVI4 auxin-responsive protein SAUR24-like1.7e-4594.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIR LSLVPHAKQILKMQS FTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1G6U7 auxin-responsive protein SAUR21-like1.7e-4593.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQ+LL HAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1G772 auxin-responsive protein SAUR21-like5.9e-4694.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRLLSLVPHAKQILKMQSSFTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1JHE3 auxin-responsive protein SAUR24-like1.7e-4594.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIR LSLVPHAKQILKMQS FTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

SwissProt top hitse value%identityAlignment
Q9FJF7 Auxin-responsive protein SAUR222.6e-2263.29Show/hide
Query:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PK  +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E+EFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJF9 Auxin-responsive protein SAUR215.8e-2260.71Show/hide
Query:  AKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        AK+IL   ++        PK  +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  AKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR201.5e-2264.56Show/hide
Query:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PK  +AVYVGE Q+KR++VPISYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSR Q
Subjt:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJG1 Auxin-responsive protein SAUR195.8e-2263.29Show/hide
Query:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PK  +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FK62 Auxin-responsive protein SAUR241.2e-2264.56Show/hide
Query:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PK  +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.4e-2658.16Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        M IR+  ++  +KQ+LK   S + N + +PK H+AVYVGE +Q++RFVVP++YL+HP FQ+LL  AEEEFGF HP GGLTIPC E  FIDL SRL  S
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

AT4G34790.1 SAUR-like auxin-responsive protein family2.8e-2453.7Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMD-----------VPKSHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFI
        MG+ + S++P+AKQI K QS   KN              VPK HVAVYVGE +++KRFVVPISYLNHP F++ L+ AEEE GFHH  GGLTIPC+E++F+
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMD-----------VPKSHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFI

Query:  DLTSRLQV
         L +  Q+
Subjt:  DLTSRLQV

AT4G34810.1 SAUR-like auxin-responsive protein family2.3e-2657.14Show/hide
Query:  MGIRLLSLVPHAKQILKMQSSFTKNQMD------VPKSHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDL-
        MG+   ++    KQILK+ S   +N+        VPK HVAVYVG   E+++KRFVVPIS+LNHPSF++ LS AEEEFGF+HP GGLTIPC+E+ F+DL 
Subjt:  MGIRLLSLVPHAKQILKMQSSFTKNQMD------VPKSHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDL-

Query:  TSRLQ
         SRLQ
Subjt:  TSRLQ

AT4G38840.1 SAUR-like auxin-responsive protein family3.0e-2658.76Show/hide
Query:  MGIRLLSLVPHAKQILK----MQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSR
        M IR+  ++  +KQIL+    + SS + + +DVPK ++AVYVGE   KRFVVP+SYL+ PSFQ LL  AEEEFGF HP GGLTIPC E+ FIDL SR
Subjt:  MGIRLLSLVPHAKQILK----MQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSR

AT5G18080.1 SAUR-like auxin-responsive protein family8.2e-2464.56Show/hide
Query:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PK  +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  KMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGGTTGCTATCTTTGGTTCCACATGCCAAACAAATTTTAAAGATGCAGTCAAGTTTCACCAAAAACCAGATGGATGTTCCAAAAAGCCATGTGGCAGTTTA
TGTGGGAGAGATCCAAAGGAAACGGTTCGTGGTTCCGATATCGTACTTGAACCATCCATCGTTCCAGCAACTGCTCAGCCACGCAGAGGAAGAGTTTGGCTTCCATCATC
CTCAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCATTTATTGATCTCACTTCTAGATTGCAAGTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGGTTGCTATCTTTGGTTCCACATGCCAAACAAATTTTAAAGATGCAGTCAAGTTTCACCAAAAACCAGATGGATGTTCCAAAAAGCCATGTGGCAGTTTA
TGTGGGAGAGATCCAAAGGAAACGGTTCGTGGTTCCGATATCGTACTTGAACCATCCATCGTTCCAGCAACTGCTCAGCCACGCAGAGGAAGAGTTTGGCTTCCATCATC
CTCAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCATTTATTGATCTCACTTCTAGATTGCAAGTATCTTGA
Protein sequenceShow/hide protein sequence
MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS