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MS027943 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS027943
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR23-like
Genome locationscaffold375:1522848..1523144
RNA-Seq ExpressionMS027943
SyntenyMS027943
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571050.1 Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia]6.0e-4082.47Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPSILLNA+Q+LK QA+ST NQ DVPKGHIAVYVGEIQRKRF+VPISYL HP+F+DLL R+EEEFG+ HPMGGLTIPCREDAFI+LT+RLH S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

XP_004147014.1 auxin-responsive protein SAUR21 [Cucumis sativus]1.7e-3984.54Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPS+LLNA+Q+LK        Q+DVPKGHIAVYVG+IQRKRFLVPISYLNHPTFM LLKRAEEEFGYNHPMGGLTIPCREDAF+DLTSRLHSS
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

XP_022146164.1 auxin-responsive protein SAUR23-like [Momordica charantia]1.2e-4897.96Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW
        MGIRLPSILLNARQVLKN AISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHP FMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW

XP_022146173.1 auxin-responsive protein SAUR23-like [Momordica charantia]7.0e-4182.47Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPSILLNA+Q+LK QA S+ N++D+PKGHIAVYVGEIQ KRF+VPISYLNHP+F++LLKRAEEEFG+NHPMGGLTIPCRE+AFIDLTSRLH+S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

XP_038901160.1 auxin-responsive protein SAUR21-like [Benincasa hispida]9.2e-4189.69Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPS+LLNARQVLK QA     Q DVPKGHIAVYVGEIQRKRFLVPISYLNHPTFM LLKRAEEEFGYNHPMGGLTIPCREDAF+DLTSRLHSS
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

TrEMBL top hitse value%identityAlignment
A0A0A0LLG5 Uncharacterized protein8.4e-4084.54Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPS+LLNA+Q+LK        Q+DVPKGHIAVYVG+IQRKRFLVPISYLNHPTFM LLKRAEEEFGYNHPMGGLTIPCREDAF+DLTSRLHSS
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

A0A6J1CXC2 auxin-responsive protein SAUR23-like5.8e-4997.96Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW
        MGIRLPSILLNARQVLKN AISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHP FMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW

A0A6J1CXW2 auxin-responsive protein SAUR23-like3.4e-4182.47Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPSILLNA+Q+LK QA S+ N++D+PKGHIAVYVGEIQ KRF+VPISYLNHP+F++LLKRAEEEFG+NHPMGGLTIPCRE+AFIDLTSRLH+S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

A0A6J1FYM2 auxin-responsive protein SAUR21-like1.9e-3981.44Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPSILLNA+Q+LK QA+ST NQ  VPKGHIAVYVGEIQRKRF+VPISYL HP+F+DLL R+EEEFG+ HPMGGLTIPCREDAFI+LT+RLH S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

A0A6J1JHD8 auxin-responsive protein SAUR21-like1.4e-3981.44Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        MGIRLPSILLNA+Q+LK QA+ST NQ DVPKGHIAVYVGEIQ+KRF+VPISYL HP F+DLL R+EEEFG+ HPMGGLTIPCREDAFI+LT+RLH S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

SwissProt top hitse value%identityAlignment
P33080 Auxin-induced protein X10A4.3e-2556.84Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH
        MG RLP I      +  NQA  +S   +VPKG++ VYVG+ + +RFL+P+SYLN P+F DLL +AEEEFGY+HPMGGLTIPC+ED F+ +TS L+
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH

Q9FJF6 Auxin-responsive protein SAUR234.3e-2560.92Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH
        LL A+++L   A + S     PKG +AVYVGE Q+KR+LVP+SYLN P+F  LL ++EEEFG++HPMGGLTIPC ED FI++TSRLH
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH

Q9FJF7 Auxin-responsive protein SAUR224.8e-2459.3Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL
        LL A+++L     ST+     PKG +AVYVGE Q+KR+LVP+SYLN P+F  LL ++E+EFG++HPMGGLTIPC ED FI++TSRL
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL

Q9FJG0 Auxin-responsive protein SAUR204.8e-2461.18Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSR
        LL A+++L     ST+     PKG +AVYVGE Q+KR+LVPISYLN P+F  LL ++EEEFG++HPMGGLTIPC ED FI++TSR
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSR

Q9FK62 Auxin-responsive protein SAUR243.6e-2460.47Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL
        LL A+++L     ST      PKG +AVYVGE Q+KR+LVP+SYLN P+F  LL ++EEEFG++HPMGGLTIPC ED FI++TSRL
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family8.6e-2958.16Show/hide
Query:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGE-IQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS
        M IR+  +L +++Q+LK+ + S SN   +PKGH+AVYVGE +Q++RF+VP++YL+HP F  LL++AEEEFG++HPMGGLTIPC E  FIDL SRL +S
Subjt:  MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGE-IQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSS

AT4G34810.1 SAUR-like auxin-responsive protein family1.8e-2655.77Show/hide
Query:  MGIRLPSILLNARQVLKNQAI------STSNQYDVPKGHIAVYVG---EIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDL-
        MG+   +I    +Q+LK  ++      S+S+   VPKGH+AVYVG   E+++KRF+VPIS+LNHP+F + L RAEEEFG+NHPMGGLTIPCRE+ F+DL 
Subjt:  MGIRLPSILLNARQVLKNQAI------STSNQYDVPKGHIAVYVG---EIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDL-

Query:  TSRL
         SRL
Subjt:  TSRL

AT4G38840.1 SAUR-like auxin-responsive protein family1.0e-2956.57Show/hide
Query:  MGIRLPSILLNARQVLKNQAI----STSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH
        M IR+P +L +++Q+L+   +    S+S+  DVPKG++AVYVGE   KRF+VP+SYL+ P+F DLL++AEEEFG++HPMGGLTIPC E+ FIDL SR +
Subjt:  MGIRLPSILLNARQVLKNQAI----STSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH

AT5G18060.1 SAUR-like auxin-responsive protein family3.1e-2660.92Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH
        LL A+++L   A + S     PKG +AVYVGE Q+KR+LVP+SYLN P+F  LL ++EEEFG++HPMGGLTIPC ED FI++TSRLH
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLH

AT5G18080.1 SAUR-like auxin-responsive protein family2.6e-2560.47Show/hide
Query:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL
        LL A+++L     ST      PKG +AVYVGE Q+KR+LVP+SYLN P+F  LL ++EEEFG++HPMGGLTIPC ED FI++TSRL
Subjt:  LLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTCGGTTGCCTTCGATTCTCCTCAATGCCAGGCAAGTTCTCAAAAATCAAGCTATTTCTACTAGCAACCAATATGATGTTCCGAAAGGTCACATTGCAGTCTA
TGTCGGAGAAATCCAAAGGAAGCGGTTTTTAGTTCCAATATCATACTTGAACCATCCTACATTCATGGATTTGCTCAAGAGGGCAGAGGAAGAGTTTGGATACAATCATC
CTATGGGTGGCTTGACAATTCCCTGCAGAGAAGATGCTTTCATTGATCTCACTTCAAGGCTACATAGCTCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTCGGTTGCCTTCGATTCTCCTCAATGCCAGGCAAGTTCTCAAAAATCAAGCTATTTCTACTAGCAACCAATATGATGTTCCGAAAGGTCACATTGCAGTCTA
TGTCGGAGAAATCCAAAGGAAGCGGTTTTTAGTTCCAATATCATACTTGAACCATCCTACATTCATGGATTTGCTCAAGAGGGCAGAGGAAGAGTTTGGATACAATCATC
CTATGGGTGGCTTGACAATTCCCTGCAGAGAAGATGCTTTCATTGATCTCACTTCAAGGCTACATAGCTCTTGGTAG
Protein sequenceShow/hide protein sequence
MGIRLPSILLNARQVLKNQAISTSNQYDVPKGHIAVYVGEIQRKRFLVPISYLNHPTFMDLLKRAEEEFGYNHPMGGLTIPCREDAFIDLTSRLHSSW