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MS028009 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028009
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold382:381681..381968
RNA-Seq ExpressionMS028009
SyntenyMS028009
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.0e-0537.14Show/hide
Query:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAR
        ++ A      H+ +ESD L AI LI  ++  RG+E NW+++I+ L+  F+ + F H  R+ N+ AH LA+
Subjt:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAR
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.5e-0838.82Show/hide
Query:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQF
        + LA RLG+  V++E+D LEA+NLI     W+GE  +W+ DI+  +  F  + F H++RESN  A+ L RE + +R        F
Subjt:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQF
XP_023889265.1 uncharacterized protein LOC112001321 [Quercus suber]1.0e-0444.29Show/hide
Query:  LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREA
        LAL LG+ HV++ESD L  I  I  D+ + GE  + + +IK++S +FS   F H+ R  N+ AH LAR A
Subjt:  LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREA
XP_023894347.1 uncharacterized protein LOC112006297 [Quercus suber]6.7e-0444.29Show/hide
Query:  LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREA
        LAL LG+ HV+++SD L  I  I  D+   GE  + + +IK++S +FS  LF H+ R  N+ AH LAR A
Subjt:  LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREA
TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248742.9e-0537.14Show/hide
Query:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAR
        ++ A      H+ +ESD L AI LI  ++  RG+E NW+++I+ L+  F+ + F H  R+ N+ AH LA+
Subjt:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAR
A0A6J1DZK3 uncharacterized protein LOC1110249687.4e-0938.82Show/hide
Query:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQF
        + LA RLG+  V++E+D LEA+NLI     W+GE  +W+ DI+  +  F  + F H++RESN  A+ L RE + +R        F
Subjt:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQF
A0A6P9EME2 uncharacterized protein LOC1183481739.4e-0438.67Show/hide
Query:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKV
        M+  + +G+ H+++ESD L +I+ +  D            +IK+L+  F L LF H+YRE N+ AH LAR A KV
Subjt:  MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTTGGCGCTACGCCTTGGTCTGAAGCATGTTTTGATCGAGTCTGATTATTTGGAGGCAATAAACTTGATTATTGGAGATCTTGATTGGAGAGGTGAAGAGGCTAA
TTGGATTTTGGACATCAAAGAGCTTTCTCACGCATTCTCTCTGGTCTTGTTTCATCATATGTATAGGGAATCAAACCAGGGAGCTCACTCCTTGGCAAGGGAAGCTCTCA
AGGTTAGGGCAAGCTTATCTATGGCTTTCCAATTTTCCTCTTTGCGTTCGTCAGCGTGTTGTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTTGGCGCTACGCCTTGGTCTGAAGCATGTTTTGATCGAGTCTGATTATTTGGAGGCAATAAACTTGATTATTGGAGATCTTGATTGGAGAGGTGAAGAGGCTAA
TTGGATTTTGGACATCAAAGAGCTTTCTCACGCATTCTCTCTGGTCTTGTTTCATCATATGTATAGGGAATCAAACCAGGGAGCTCACTCCTTGGCAAGGGAAGCTCTCA
AGGTTAGGGCAAGCTTATCTATGGCTTTCCAATTTTCCTCTTTGCGTTCGTCAGCGTGTTGTTGCTGA
Protein sequenceShow/hide protein sequence
MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQFSSLRSSACCC