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MS028013 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028013
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF2431 domain-containing protein
Genome locationscaffold382:765802..766255
RNA-Seq ExpressionMS028013
SyntenyMS028013
Gene Ontology termsGO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity (molecular function)
InterPro domainsIPR019446 - Domain of unknown function DUF2431


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY11907.1 Domain of Uncharacterized protein function, putative [Theobroma cacao]7.2e-3264.22Show/hide
Query:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF
        + +++KWIKHYSS H ILLVGEGDFSF+ CLA +FGSAANMVATSLDSKE L  KY+   TNL+EL+ELGC + H VDA TMS+H LL+ K FD++VFNF
Subjt:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF

Query:  PMLDFISKK
        P   F+ ++
Subjt:  PMLDFISKK

XP_002523255.2 uncharacterized protein At4g26485 [Ricinus communis]4.2e-3267.96Show/hide
Query:  LNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVF
        L    ++KWIKHYSSSH ILLVGEGDFSF+ CLA  FGSA+NMVATSLDSK  L+ KY+    +LKEL++LGCR+ H VDA+TMSQH LL H +FDR+VF
Subjt:  LNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVF

Query:  NFP
        NFP
Subjt:  NFP

XP_006370461.1 uncharacterized protein At4g26485 [Populus trichocarpa]9.5e-3266.98Show/hide
Query:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR
        ME L+    +KWIKHYSSS  ILLVGEGDFSF+ C+   FGSA NMVATSL SKE+++ KY+  ATNL+ELE+LGC V H+VDA TMS+HPLL  K FDR
Subjt:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR

Query:  VVFNFP
        +VFNFP
Subjt:  VVFNFP

XP_017979628.1 PREDICTED: uncharacterized protein At4g26485 [Theobroma cacao]7.2e-3264.22Show/hide
Query:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF
        + +++KWIKHYSS H ILLVGEGDFSF+ CLA +FGSAANMVATSLDSKE L  KY+   TNL+EL+ELGC + H VDA TMS+H LL+ K FD++VFNF
Subjt:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF

Query:  PMLDFISKK
        P   F+ ++
Subjt:  PMLDFISKK

XP_022139691.1 uncharacterized protein At4g26485-like [Momordica charantia]1.6e-5092.11Show/hide
Query:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR
        ME LNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGC VAHDVDAT+MSQHPLLRHKSFDR
Subjt:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR

Query:  VVFNFPMLDFISKK
        VVFNFP   F  K+
Subjt:  VVFNFPMLDFISKK

TrEMBL top hitse value%identityAlignment
A0A061F5E4 Domain of Uncharacterized protein function, putative3.5e-3264.22Show/hide
Query:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF
        + +++KWIKHYSS H ILLVGEGDFSF+ CLA +FGSAANMVATSLDSKE L  KY+   TNL+EL+ELGC + H VDA TMS+H LL+ K FD++VFNF
Subjt:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNF

Query:  PMLDFISKK
        P   F+ ++
Subjt:  PMLDFISKK

A0A6J1CDH1 uncharacterized protein At4g26485-like7.5e-5192.11Show/hide
Query:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR
        ME LNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGC VAHDVDAT+MSQHPLLRHKSFDR
Subjt:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR

Query:  VVFNFPMLDFISKK
        VVFNFP   F  K+
Subjt:  VVFNFPMLDFISKK

A0A6J1CEN8 uncharacterized protein At4g26485-like1.3e-3182.76Show/hide
Query:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPL
        N++DQKWIKHYSSSHTILL GEGDFSFSTCLA TFGSA NMVATSLDS+ SL SKY  V TNLK LE+LGC V HDVDATTMSQHPL
Subjt:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPL

U5GU01 DUF2431 domain-containing protein4.6e-3266.98Show/hide
Query:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR
        ME L+    +KWIKHYSSS  ILLVGEGDFSF+ C+   FGSA NMVATSL SKE+++ KY+  ATNL+ELE+LGC V H+VDA TMS+HPLL  K FDR
Subjt:  MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR

Query:  VVFNFP
        +VFNFP
Subjt:  VVFNFP

V4UII5 DUF2431 domain-containing protein7.8e-3269.31Show/hide
Query:  QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPMLD
        +KWI+HYSS H ILLVGEGDFSF+ C A +FGSA N VATSLDSKE L++KY+  A+NLKELEE GC + H+VDA TMSQHP+L  KSFDR+VFNFP   
Subjt:  QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPMLD

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
F4I1X0 Heavy metal-associated isoprenylated plant protein 415.6e-2757.84Show/hide
Query:  DQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPML
        ++ W+KHYSS+H ILLVGEGDFSFS  LAT FGSA+N+ A+SLDS + ++ KY    +NLK L+ LG  + H VDATT+  HP LR++ FDRV+FNFP  
Subjt:  DQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPML

Query:  DF
         F
Subjt:  DF

O94480 25S rRNA (uridine-N(3))-methyltransferase1.5e-1135.85Show/hide
Query:  EGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMV-ATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR
        +G N    ++++  +  ++  LL+GEG+FSF+  L     S+   V ATS DSKE L  KY   A  + ++E  G +V H++DAT +  H  L+ + FD 
Subjt:  EGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMV-ATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDR

Query:  VVFNFP
        + +NFP
Subjt:  VVFNFP

P0C8L4 Uncharacterized protein At4g264853.4e-2455.67Show/hide
Query:  QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP
        +KWI+HYSS+H ILLVGEG+FSFS CLA+ FGSA N+ ATSLDS++ L  KY     N+  L+  GC + H+VD  TMS    L  + +DR+VFNFP
Subjt:  QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP

Q3UY23 Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog1.2e-0536.47Show/hide
Query:  ILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP
        +LLVGEG+FSF+  L      + ++ AT    + +L         NLK L E G  V   VD T +S       + FDR+ FNFP
Subjt:  ILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP

Q9BRP7 Ferredoxin-fold anticodon-binding domain-containing protein 11.0e-0435.29Show/hide
Query:  ILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP
        +LLVGEG+FSF+  L+ T   +  + AT L  + + L++      NL+ L E G  V   VD T ++    L  + FD++ F FP
Subjt:  ILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP

Arabidopsis top hitse value%identityAlignment
AT1G55790.1 Domain of unknown function (DUF2431)4.0e-2857.84Show/hide
Query:  DQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPML
        ++ W+KHYSS+H ILLVGEGDFSFS  LAT FGSA+N+ A+SLDS + ++ KY    +NLK L+ LG  + H VDATT+  HP LR++ FDRV+FNFP  
Subjt:  DQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPML

Query:  DF
         F
Subjt:  DF

AT1G55800.1 Domain of unknown function (DUF2431)2.0e-2444.68Show/hide
Query:  LNNSRD---QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDS---------------------------KESLLSKYTHVATNLKELEE
        LN  RD   + W+KHYSS H ILLVGEGDFSFS  LAT FGSA+N+ A+SLDS                            + ++ KY +  +NL+ L+ 
Subjt:  LNNSRD---QKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDS---------------------------KESLLSKYTHVATNLKELEE

Query:  LGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPMLDFISKK
        LG  + H VDATT+  HP LR++ FDRV+FNFP   F  K+
Subjt:  LGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPMLDFISKK

AT5G25030.1 Domain of unknown function (DUF2431)1.0e-1543.43Show/hide
Query:  RDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP
        ++ K +  YS+   IL+VGEG+FSFS  LA   GSA N+ A SLD +E L   Y +   N++ELE LGC V   V+  +M     L H  +D ++FNFP
Subjt:  RDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP

AT5G56060.1 Domain of unknown function (DUF2431)2.2e-1851.06Show/hide
Query:  IKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP
        ++ YS+   ILLVGEGDFSFS  LA  FGSA N+ ATSLD++E L  KYT    N++ LE  GC V H V+  +MS     R   +DR++FNFP
Subjt:  IKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFP

AT5G56075.1 Domain of unknown function (DUF2431)1.2e-1944.86Show/hide
Query:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKS-FDRVVFN
        N ++ K ++HY++   ILLVGEGDFSFS  LA  FGSA+N+ ATSLD++  L  K+ +   N++ELE LGC V + V+  +M   P +   + +DRV+FN
Subjt:  NSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKS-FDRVVFN

Query:  FPMLDFI
        FP  + +
Subjt:  FPMLDFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGCCTAAACAACAGTAGAGATCAGAAATGGATCAAGCATTACAGCAGCTCCCACACCATACTCCTCGTCGGAGAAGGCGACTTCTCCTTCTCGACGTGCTTAGC
CACAACCTTCGGCTCTGCCGCTAACATGGTTGCCACTTCTCTCGACTCGAAAGAGTCACTACTGAGCAAGTATACTCACGTCGCCACAAACTTGAAAGAGTTGGAGGAGC
TCGGCTGCAGGGTTGCGCACGACGTGGACGCGACAACGATGAGCCAACACCCGCTTCTCCGACACAAGTCATTCGACCGCGTCGTCTTCAACTTCCCCATGCTGGATTTC
ATTTCAAAGAAAGTGACATTAGACAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGCCTAAACAACAGTAGAGATCAGAAATGGATCAAGCATTACAGCAGCTCCCACACCATACTCCTCGTCGGAGAAGGCGACTTCTCCTTCTCGACGTGCTTAGC
CACAACCTTCGGCTCTGCCGCTAACATGGTTGCCACTTCTCTCGACTCGAAAGAGTCACTACTGAGCAAGTATACTCACGTCGCCACAAACTTGAAAGAGTTGGAGGAGC
TCGGCTGCAGGGTTGCGCACGACGTGGACGCGACAACGATGAGCCAACACCCGCTTCTCCGACACAAGTCATTCGACCGCGTCGTCTTCAACTTCCCCATGCTGGATTTC
ATTTCAAAGAAAGTGACATTAGACAAATAG
Protein sequenceShow/hide protein sequence
MEGLNNSRDQKWIKHYSSSHTILLVGEGDFSFSTCLATTFGSAANMVATSLDSKESLLSKYTHVATNLKELEELGCRVAHDVDATTMSQHPLLRHKSFDRVVFNFPMLDF
ISKKVTLDK